JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RADIL_chr7_4792055_4888716	0/0	c0062	3228	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	c0063	3228	1	0	0	1	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	c0064	3228	1	0	1	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	c0065	3228	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	c0066	3237	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	c0067	3228	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADX_chrX_106606978_106684439	1/1	c0001	2568	169	39	26	77	7	18	copy fasta	RADX	chrX	106606978	106684439
RADX_chrX_106606978_106684439	0/0	c0002	2568	31	30	1	0	0	0	copy fasta	RADX	chrX	106606978	106684439
RADX_chrX_106606978_106684439	0/0	c0003	2568	2	0	0	2	0	0	copy fasta	RADX	chrX	106606978	106684439
RADX_chrX_106606978_106684439	0/0	c0004	2568	1	1	0	0	0	0	copy fasta	RADX	chrX	106606978	106684439
RADX_chrX_106606978_106684439	0/0	c0005	2568	1	0	0	1	0	0	copy fasta	RADX	chrX	106606978	106684439
RAE1_chr20_57346255_57384202	1/1	c0001	1107	294	61	54	130	15	32	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	c0002	1107	21	19	2	0	0	0	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	c0003	1107	16	11	3	0	1	1	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	c0004	1107	6	0	3	0	0	3	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	c0005	1107	5	5	0	0	0	0	copy fasta	RAE1	chr20	57346255	57384202
RAET1E_chr6_149878179_149903113	0/0	c0001	792	112	6	13	79	3	11	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/1	c0002	792	98	3	27	53	5	9	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	1/0	c0003	792	59	2	19	24	5	8	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	c0004	792	56	14	15	13	3	11	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	c0005	792	46	36	4	3	0	3	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	c0006	792	16	16	0	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	c0007	792	9	9	0	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	c0008	792	6	6	0	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	c0009	792	4	1	1	0	0	2	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	c0010	792	4	4	0	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	c0011	792	1	0	0	1	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	c0012	792	1	1	0	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	c0013	792	1	0	0	1	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	c0014	792	1	0	1	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1G_chr6_149911878_149928121	1/1	c0001	1005	281	66	60	104	13	36	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	c0002	1005	135	8	13	98	3	13	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	c0003	1005	12	11	1	0	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	c0004	1005	8	0	8	0	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	c0005	1005	3	0	0	3	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	c0006	1005	3	3	0	0	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	c0007	1005	2	2	0	0	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	c0008	1005	2	1	1	0	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	c0009	1005	2	0	0	2	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	c0010	1005	2	2	0	0	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	c0011	1005	1	1	0	0	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	c0012	1005	1	1	0	0	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	c0013	1005	1	0	1	0	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	c0014	1005	1	0	0	1	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	c0015	1005	1	1	0	0	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	c0016	1005	1	0	0	0	0	1	copy fasta	RAET1G	chr6	149911878	149928121
RAET1L_chr6_150013334_150030532	1/0	c0001	741	145	16	13	101	3	11	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/1	c0002	741	126	11	25	61	6	22	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0003	741	125	32	30	43	8	12	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0004	741	10	0	0	8	0	2	copy fasta	RAET1L	chr6	150013334	150030532