JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ASCC3_chr6_100503194_100886329	0/0	c0017	6609	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0018	6609	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0019	6609	1	0	0	1	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0020	6609	1	0	0	0	0	1	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0021	6609	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0022	6609	1	0	1	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	1/0	c0023	6609	1	0	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0024	6609	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0025	6609	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0026	6609	1	0	0	0	0	1	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0027	6609	1	0	1	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0028	6609	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0029	6609	1	0	0	0	1	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0030	6609	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0031	6609	1	0	0	1	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0032	6609	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0033	6609	1	1	0	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0034	6609	1	0	1	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0035	6609	1	0	1	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0036	6609	1	0	0	1	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	c0037	6609	1	0	1	0	0	0	copy fasta	ASCC3	chr6	100503194	100886329
ASCL1_chr12_102952674_102965513	1/1	c0001	711	213	36	43	98	9	25	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0002	714	48	23	11	7	2	5	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0003	720	40	6	3	29	0	2	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0004	717	7	4	1	0	0	2	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0005	714	6	3	1	0	2	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0006	711	6	6	0	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0007	708	6	4	2	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0008	702	4	0	1	0	0	3	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0009	714	4	0	4	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0010	723	3	0	3	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0011	714	3	3	0	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0012	723	2	2	0	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0013	708	2	0	0	2	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0014	714	1	0	1	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0015	678	1	0	0	0	0	1	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0016	729	1	1	0	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0017	726	1	1	0	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0018	726	1	1	0	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0019	711	1	0	0	0	0	1	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0020	708	1	1	0	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0021	699	1	0	0	0	0	1	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0022	711	1	1	0	0	0	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	c0023	714	1	0	0	0	1	0	copy fasta	ASCL1	chr12	102952674	102965513
ASCL2_chr11_2263498_2275588	1/1	c0001	582	390	88	72	172	11	45	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	c0002	582	24	7	7	8	2	0	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	c0003	582	1	0	0	1	0	0	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	c0004	582	1	1	0	0	0	0	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	c0005	582	1	0	0	1	0	0	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	c0006	582	1	0	0	0	1	0	copy fasta	ASCL2	chr11	2263498	2275588