JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAI1_chr17_17676458_17816453	0/0	c0012	5721	3	1	1	0	1	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	1/0	c0013	5721	3	0	2	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0014	5709	2	0	1	0	1	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0015	5718	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0016	5718	1	0	0	1	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0017	5718	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0018	5718	1	0	0	1	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0019	5718	1	0	0	1	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0020	5718	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0021	5718	1	0	1	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0022	5718	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0023	5718	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0024	5718	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0025	5718	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0026	5718	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0027	5721	1	0	1	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0028	5721	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0029	5721	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0030	5706	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0031	5715	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0032	5718	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0033	5718	1	0	0	1	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0034	5721	1	0	0	1	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0035	5721	1	0	0	0	0	1	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0036	5721	1	0	1	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0037	5721	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI2_chrX_17795049_17866298	0/1	c0001	1593	166	46	26	69	5	19	copy fasta	RAI2	chrX	17795049	17866298
RAI2_chrX_17795049_17866298	0/0	c0002	1593	3	0	3	0	0	0	copy fasta	RAI2	chrX	17795049	17866298
RAI2_chrX_17795049_17866298	0/0	c0003	1593	2	1	1	0	0	0	copy fasta	RAI2	chrX	17795049	17866298
RAI2_chrX_17795049_17866298	0/0	c0004	1575	1	0	0	1	0	0	copy fasta	RAI2	chrX	17795049	17866298
RAI2_chrX_17795049_17866298	0/0	c0005	1592	1	0	0	1	0	0	copy fasta	RAI2	chrX	17795049	17866298
RAI2_chrX_17795049_17866298	0/0	c0006	1593	1	1	0	0	0	0	copy fasta	RAI2	chrX	17795049	17866298
RAI2_chrX_17795049_17866298	1/0	c0007	1593	1	0	0	0	0	0	copy fasta	RAI2	chrX	17795049	17866298
RAI2_chrX_17795049_17866298	0/0	c0008	1593	1	1	0	0	0	0	copy fasta	RAI2	chrX	17795049	17866298
RAI2_chrX_17795049_17866298	0/0	c0009	1593	1	1	0	0	0	0	copy fasta	RAI2	chrX	17795049	17866298
RAI2_chrX_17795049_17866298	0/0	c0010	1593	1	0	1	0	0	0	copy fasta	RAI2	chrX	17795049	17866298
RAI2_chrX_17795049_17866298	0/0	c0011	1593	1	0	0	0	0	1	copy fasta	RAI2	chrX	17795049	17866298
RALA_chr7_39618572_39713120	1/1	c0001	621	365	88	70	157	12	36	copy fasta	RALA	chr7	39618572	39713120
RALA_chr7_39618572_39713120	0/0	c0002	621	1	0	0	1	0	0	copy fasta	RALA	chr7	39618572	39713120
RALBP1_chr18_9470513_9543114	1/1	c0001	1968	349	93	61	149	18	26	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	c0002	1968	4	0	4	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	c0003	1968	3	0	0	2	0	1	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	c0004	1968	2	2	0	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	c0005	1968	1	0	0	0	0	1	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	c0006	1968	1	1	0	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	c0007	1968	1	0	1	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	c0008	1968	1	0	0	1	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALB_chr2_120247852_120299710	1/1	c0001	621	342	86	60	147	11	36	copy fasta	RALB	chr2	120247852	120299710
RALB_chr2_120247852_120299710	0/0	c0002	621	15	0	6	0	5	4	copy fasta	RALB	chr2	120247852	120299710
RALB_chr2_120247852_120299710	0/0	c0003	621	1	0	0	1	0	0	copy fasta	RALB	chr2	120247852	120299710