JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RALGAPA1_chr14_35533356_35814295	1/1	c0001	7629	90	20	20	36	1	11	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	c0002	7629	78	40	10	18	2	8	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	c0003	7629	47	8	2	33	0	4	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	c0004	7629	15	4	0	2	0	9	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	c0005	7629	12	0	1	7	0	4	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	c0006	7629	8	0	0	8	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	c0007	7629	7	1	3	0	1	2	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	c0008	7629	2	0	1	0	0	1	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	c0009	7629	2	1	1	0	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	c0010	7629	2	2	0	0	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	c0011	7629	1	0	0	1	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	c0012	7629	1	0	0	1	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	c0013	7629	1	0	0	0	0	1	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	c0014	7629	1	0	0	1	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	c0015	7629	1	1	0	0	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	c0016	7629	1	0	0	1	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	c0017	7629	1	0	1	0	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	c0018	7629	1	0	1	0	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	c0019	7629	1	1	0	0	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA2_chr20_20384530_20717644	1/0	c0001	5622	63	28	7	25	0	2	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	c0002	5622	23	1	1	21	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	c0003	5622	14	7	1	2	0	4	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/1	c0004	5622	8	0	1	4	0	2	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	c0005	5622	5	5	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	c0006	5622	2	0	2	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	c0007	5622	2	2	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	c0008	5622	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	c0009	5622	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	c0010	5622	1	0	1	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	c0011	5622	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	c0012	5622	1	0	1	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPB_chr20_38467843_38583858	1/1	c0001	4485	175	55	35	56	6	21	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	c0002	4485	15	12	3	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	c0003	4485	14	13	1	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	c0004	4485	3	3	0	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	c0005	4485	2	0	0	2	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	c0006	4485	1	1	0	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	c0007	4485	1	0	0	1	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	c0008	4485	1	0	1	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	c0009	4485	1	0	0	1	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	c0010	4485	1	0	0	1	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	c0011	4485	1	0	0	0	0	1	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	c0012	4485	1	0	0	1	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGDS_chr9_133092722_133126240	0/1	c0001	2745	83	11	14	39	5	13	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0002	2745	82	2	16	49	3	12	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0003	2745	74	9	25	34	2	4	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	1/0	c0004	2745	66	10	14	35	1	5	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0005	2745	29	28	1	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0006	2745	20	13	1	4	0	2	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0007	2745	17	2	7	2	3	3	copy fasta	RALGDS	chr9	133092722	133126240