JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RALGDS_chr9_133092722_133126240	0/0	c0008	2745	9	0	0	6	0	3	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0009	2745	5	1	2	1	0	1	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0010	2745	4	4	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0011	2745	3	3	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0012	2745	2	0	1	0	0	1	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0013	2745	2	0	2	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0014	2745	2	1	0	1	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0015	2745	2	2	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0016	2745	2	2	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0017	2745	2	0	0	2	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0018	2745	1	0	0	0	1	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0019	2745	1	0	0	1	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0020	2763	1	1	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0021	2745	1	0	0	1	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0022	2745	1	1	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0023	2745	1	1	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0024	2745	1	0	0	0	0	1	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0025	2745	1	0	1	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0026	2745	1	0	0	1	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0027	2745	1	1	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0028	2745	1	1	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0029	2745	1	0	1	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0030	2745	1	1	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0031	2745	1	1	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0032	2745	1	1	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0033	2745	1	1	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0034	2775	1	0	0	0	0	1	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0035	2745	1	1	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0036	2745	1	0	0	0	1	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	c0037	2745	1	0	1	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGPS1_chr9_126909782_127228166	1/1	c0001	1674	253	76	53	86	14	22	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	c0002	1674	18	0	0	16	0	2	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	c0003	1674	4	3	1	0	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	c0004	1674	1	1	0	0	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS2_chr1_178720244_178926840	1/1	c0001	1752	257	72	45	112	4	22	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	c0002	1752	45	11	10	22	2	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	c0003	1752	2	1	1	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	c0004	1752	1	1	0	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	c0005	1752	1	1	0	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALYL_chr8_84178274_84926844	0/0	c0001	876	82	54	10	6	6	6	copy fasta	RALYL	chr8	84178274	84926844
RALY_chr20_33988911_34089884	0/1	c0001	924	140	38	25	50	6	20	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	1/0	c0002	921	83	20	18	37	2	5	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	c0003	924	23	22	1	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	c0004	924	22	0	2	12	2	6	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	c0005	924	5	1	2	0	2	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	c0006	921	4	1	3	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	c0007	924	3	0	0	3	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	c0008	918	3	0	0	3	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	c0009	924	2	2	0	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	c0010	921	2	0	0	0	0	2	copy fasta	RALY	chr20	33988911	34089884