JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RALY_chr20_33988911_34089884	0/0	c0011	924	1	0	0	0	0	1	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	c0012	924	1	0	1	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	c0013	921	1	0	0	1	0	0	copy fasta	RALY	chr20	33988911	34089884
RAMACL_chr6_166578009_166591678	0/0	c0000	0	43	40	3	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	1/1	c0001	357	380	50	70	198	17	43	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	c0002	357	8	0	0	8	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	c0003	357	6	0	6	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	c0004	357	2	2	0	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	c0005	357	2	0	1	0	0	1	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	c0006	357	1	0	0	0	1	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMAC_chr15_82981210_82996057	1/1	c0001	357	414	85	77	188	18	44	copy fasta	RAMAC	chr15	82981210	82996057
RAMAC_chr15_82981210_82996057	0/0	c0002	357	22	15	5	0	0	2	copy fasta	RAMAC	chr15	82981210	82996057
RAMAC_chr15_82981210_82996057	0/0	c0003	357	1	0	0	1	0	0	copy fasta	RAMAC	chr15	82981210	82996057
RAMAC_chr15_82981210_82996057	0/0	c0004	357	1	0	0	1	0	0	copy fasta	RAMAC	chr15	82981210	82996057
RAMP1_chr2_237854623_237917106	1/1	c0001	447	339	95	67	118	16	41	copy fasta	RAMP1	chr2	237854623	237917106
RAMP1_chr2_237854623_237917106	0/0	c0002	447	63	3	7	50	0	3	copy fasta	RAMP1	chr2	237854623	237917106
RAMP1_chr2_237854623_237917106	0/0	c0003	447	1	0	0	0	1	0	copy fasta	RAMP1	chr2	237854623	237917106
RAMP1_chr2_237854623_237917106	0/0	c0004	447	1	0	0	0	1	0	copy fasta	RAMP1	chr2	237854623	237917106
RAMP2_chr17_42756227_42768041	1/0	c0001	528	229	84	42	68	9	25	copy fasta	RAMP2	chr17	42756227	42768041
RAMP2_chr17_42756227_42768041	0/1	c0002	528	121	8	36	51	7	18	copy fasta	RAMP2	chr17	42756227	42768041
RAMP2_chr17_42756227_42768041	0/0	c0003	528	2	2	0	0	0	0	copy fasta	RAMP2	chr17	42756227	42768041
RAMP2_chr17_42756227_42768041	0/0	c0004	528	1	0	0	1	0	0	copy fasta	RAMP2	chr17	42756227	42768041
RAMP2_chr17_42756227_42768041	0/0	c0005	528	1	0	0	0	0	1	copy fasta	RAMP2	chr17	42756227	42768041
RAMP3_chr7_45152791_45189250	1/1	c0001	447	293	37	46	163	10	35	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	c0002	447	82	44	18	7	6	7	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	c0003	447	31	0	3	22	0	6	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	c0004	447	10	8	2	0	0	0	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	c0005	447	2	1	1	0	0	0	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	c0006	447	1	1	0	0	0	0	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	c0007	447	1	1	0	0	0	0	copy fasta	RAMP3	chr7	45152791	45189250
RANBP10_chr16_67718070_67811560	1/1	c0001	1863	146	77	33	20	2	12	copy fasta	RANBP10	chr16	67718070	67811560
RANBP10_chr16_67718070_67811560	0/0	c0002	1863	2	0	0	0	0	2	copy fasta	RANBP10	chr16	67718070	67811560
RANBP10_chr16_67718070_67811560	0/0	c0003	1863	2	0	1	1	0	0	copy fasta	RANBP10	chr16	67718070	67811560
RANBP10_chr16_67718070_67811560	0/0	c0004	1863	1	1	0	0	0	0	copy fasta	RANBP10	chr16	67718070	67811560
RANBP10_chr16_67718070_67811560	0/0	c0005	1863	1	0	0	1	0	0	copy fasta	RANBP10	chr16	67718070	67811560
RANBP17_chr5_170857018_171305015	0/0	c0001	3267	133	46	31	38	6	12	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	c0002	3267	36	11	5	17	1	2	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	c0003	3267	6	0	3	0	3	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	c0004	3267	3	3	0	0	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	c0005	3267	1	0	0	1	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	c0006	3267	1	1	0	0	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	c0007	3267	1	0	0	1	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	c0008	3267	1	1	0	0	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	c0009	3267	1	0	0	0	0	1	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	c0010	3267	1	0	0	1	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	c0011	3267	1	1	0	0	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	c0012	3267	1	1	0	0	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	c0013	3267	1	0	1	0	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	c0014	3267	1	1	0	0	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	c0015	3267	1	0	0	1	0	0	copy fasta	RANBP17	chr5	170857018	171305015