JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RANBP17_chr5_170857018_171305015	0/0	c0016	3267	1	0	0	1	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	c0017	3267	1	0	0	0	0	1	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	c0018	3267	1	1	0	0	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP1_chr22_20111104_20132355	1/1	c0001	837	428	98	70	195	16	47	copy fasta	RANBP1	chr22	20111104	20132355
RANBP1_chr22_20111104_20132355	0/0	c0002	837	2	0	0	2	0	0	copy fasta	RANBP1	chr22	20111104	20132355
RANBP1_chr22_20111104_20132355	0/0	c0003	837	1	0	0	0	0	1	copy fasta	RANBP1	chr22	20111104	20132355
RANBP1_chr22_20111104_20132355	0/0	c0004	837	1	0	0	1	0	0	copy fasta	RANBP1	chr22	20111104	20132355
RANBP2_chr2_108714482_108790809	0/1	c0001	9675	81	10	20	27	8	15	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0002	9675	27	16	6	1	2	2	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0003	9675	25	1	3	15	2	4	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0004	9675	17	15	2	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	1/0	c0005	9675	8	7	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0006	9675	8	7	0	0	0	1	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0007	9675	7	6	1	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0008	9675	7	0	1	6	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0009	9675	5	0	0	5	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0010	9675	4	0	0	3	0	1	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0011	9675	4	2	2	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0012	9675	4	4	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0013	9675	4	4	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0014	9675	3	0	1	1	0	1	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0015	9675	3	3	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0016	9675	2	2	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0017	9675	2	2	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0018	9675	2	2	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0019	9675	1	0	0	0	0	1	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0020	9675	1	0	0	1	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0021	9675	1	1	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0022	9675	1	0	0	0	1	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0023	9675	1	0	1	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0024	9675	1	1	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0025	9675	1	0	0	0	0	1	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0026	9675	1	0	0	1	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0027	9675	1	0	0	0	1	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0028	9675	1	0	0	1	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0029	9675	1	1	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0030	9675	1	1	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0031	9675	1	1	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0032	9675	1	1	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0033	9675	1	1	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0034	9675	1	1	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0035	9675	1	1	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0036	9675	1	0	0	1	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	c0037	9675	1	0	1	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP3L_chr5_36241913_36306902	0/1	c0001	1398	248	25	50	128	10	34	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	1/0	c0002	1398	100	33	14	51	0	1	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	c0003	1398	22	20	2	0	0	0	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	c0004	1398	5	5	0	0	0	0	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	c0005	1398	1	0	0	0	0	1	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	c0006	1398	1	1	0	0	0	0	copy fasta	RANBP3L	chr5	36241913	36306902