JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RANGAP1_chr22_41239779_41291187	0/0	c0009	1764	1	0	0	1	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	c0010	1764	1	1	0	0	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	c0011	1764	1	0	0	1	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGRF_chr17_8283670_8295087	1/1	c0001	561	383	88	70	171	18	34	copy fasta	RANGRF	chr17	8283670	8295087
RANGRF_chr17_8283670_8295087	0/0	c0002	561	1	0	0	1	0	0	copy fasta	RANGRF	chr17	8283670	8295087
RAN_chr12_130867066_130882678	1/1	c0001	651	422	94	80	188	14	44	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	c0002	651	4	0	0	4	0	0	copy fasta	RAN	chr12	130867066	130882678
RAP1A_chr1_111614789_111721691	1/1	c0001	555	379	85	56	182	14	40	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	c0002	555	1	1	0	0	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1B_chr12_68605899_68676901	1/1	c0001	555	387	82	65	184	12	42	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	c0002	555	1	0	1	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1GAP2_chr17_2791438_3042741	0/0	c0001	2193	47	16	9	18	1	3	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0002	2193	42	7	13	13	2	7	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/1	c0003	2193	24	0	2	12	1	8	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0004	2193	21	9	1	7	1	3	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	1/0	c0005	2193	12	4	3	3	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0006	2193	11	1	2	5	0	3	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0007	2193	10	5	1	2	1	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0008	2193	7	0	1	1	0	5	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0009	2193	7	5	0	2	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0010	2193	6	4	0	1	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0011	2193	5	1	0	3	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0012	2193	4	2	0	0	0	2	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0013	2193	4	2	0	2	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0014	2193	3	2	1	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0015	2193	3	0	3	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0016	2193	2	2	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0017	2193	1	0	0	0	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0018	2193	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0019	2193	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0020	2193	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0021	2193	1	0	0	0	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0022	2193	1	0	0	1	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0023	2193	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0024	2193	1	0	0	0	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0025	2193	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	c0026	2193	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP_chr1_21591221_21674357	0/1	c0001	1992	123	21	21	61	7	12	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0002	1992	83	14	19	47	1	2	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	1/0	c0003	1992	63	28	14	7	3	10	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0004	1992	43	0	14	19	0	10	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0005	1992	12	0	0	10	0	2	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0006	1992	10	7	2	0	1	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0007	1992	5	5	0	0	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0008	1992	4	3	1	0	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0009	1992	3	2	1	0	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0010	1992	2	2	0	0	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0011	1992	2	2	0	0	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0012	1992	2	0	0	0	1	1	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0013	1992	2	0	1	0	1	0	copy fasta	RAP1GAP	chr1	21591221	21674357