JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAP1GAP_chr1_21591221_21674357	0/0	c0014	1992	2	0	2	0	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0015	1992	2	2	0	0	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0016	1992	2	2	0	0	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0017	1992	1	1	0	0	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0018	1992	1	0	1	0	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0019	1992	1	0	0	0	1	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0020	1992	1	0	0	0	1	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0021	1992	1	0	0	1	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0022	1992	1	0	0	0	0	1	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0023	1992	1	1	0	0	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0024	1992	1	0	0	1	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0025	1992	1	0	1	0	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0026	1992	1	0	1	0	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0027	1992	1	0	0	1	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	c0028	1992	1	0	0	1	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GDS1_chr4_98256384_98448858	1/1	c0001	1824	232	75	53	76	6	20	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	c0002	1824	8	8	0	0	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	c0003	1824	1	1	0	0	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	c0004	1824	1	0	1	0	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP2A_chr13_97429169_97474128	1/1	c0001	552	342	84	60	150	10	36	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	c0002	552	2	0	0	2	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2B_chr3_153157226_153175627	1/1	c0001	552	410	79	73	204	12	40	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	c0002	552	20	17	3	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2C_chrX_132198025_132224447	1/1	c0001	552	231	68	36	90	9	26	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	c0002	537	1	0	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	c0003	552	1	0	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	c0004	553	1	0	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	c0005	551	1	0	1	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAPGEF1_chr9_131571775_131745076	1/1	c0001	3792	272	45	51	130	15	29	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	c0002	3792	33	15	2	13	0	3	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	c0003	3792	25	4	4	10	1	6	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	c0004	3792	10	8	2	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	c0005	3792	5	3	2	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	c0006	3792	5	5	0	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	c0007	3792	3	0	0	0	0	3	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	c0008	3792	2	2	0	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	c0009	3792	2	0	1	0	0	1	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	c0010	3792	1	0	1	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	c0011	3792	1	0	0	1	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	c0012	3792	1	0	0	1	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	c0013	3792	1	0	0	1	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	c0014	3792	1	0	0	1	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	c0015	3792	1	0	0	1	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	c0016	3792	1	1	0	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	c0017	3792	1	1	0	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	c0018	3792	1	0	1	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	c0019	3792	1	0	0	1	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	c0020	3792	1	0	0	1	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF2_chr4_159098079_159365173	1/0	c0001	4983	99	50	17	21	2	8	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/1	c0002	4983	71	20	28	7	5	10	copy fasta	RAPGEF2	chr4	159098079	159365173