JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ASCL2_chr11_2263498_2275588	0/0	c0007	582	1	0	0	0	0	1	copy fasta	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	c0008	582	1	0	1	0	0	0	copy fasta	ASCL2	chr11	2263498	2275588
ASCL3_chr11_8932578_8948016	0/1	c0001	546	261	31	38	157	9	25	copy fasta	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	1/0	c0002	546	75	47	9	16	0	2	copy fasta	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	c0003	546	46	1	4	31	2	8	copy fasta	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	c0004	546	37	6	18	0	4	9	copy fasta	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	c0005	546	6	6	0	0	0	0	copy fasta	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	c0006	546	5	0	2	0	0	3	copy fasta	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	c0007	546	4	4	0	0	0	0	copy fasta	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	c0008	546	1	0	1	0	0	0	copy fasta	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	c0009	546	1	0	0	1	0	0	copy fasta	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	c0010	546	1	0	0	1	0	0	copy fasta	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	c0011	546	1	0	0	0	0	1	copy fasta	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	c0012	546	1	1	0	0	0	0	copy fasta	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	c0013	546	1	0	0	0	1	0	copy fasta	ASCL3	chr11	8932578	8948016
ASCL4_chr12_107769704_107781644	1/1	c0001	519	449	86	77	218	18	48	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	c0002	519	9	8	1	0	0	0	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	c0003	519	2	2	0	0	0	0	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	c0004	519	2	0	0	0	0	2	copy fasta	ASCL4	chr12	107769704	107781644
ASCL5_chr1_201108943_201132184	1/1	c0001	621	320	76	60	138	12	32	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	c0002	621	52	3	12	31	2	4	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	c0003	621	28	0	5	18	0	5	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	c0004	621	15	14	1	0	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	c0005	621	1	0	0	0	0	1	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	c0006	621	1	0	0	1	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	c0007	621	1	1	0	0	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASDURF_chr2_189656459_189671401	1/1	c0001	291	336	95	69	126	10	34	copy fasta	ASDURF	chr2	189656459	189671401
ASDURF_chr2_189656459_189671401	0/0	c0002	291	2	2	0	0	0	0	copy fasta	ASDURF	chr2	189656459	189671401
ASDURF_chr2_189656459_189671401	0/0	c0003	291	1	0	1	0	0	0	copy fasta	ASDURF	chr2	189656459	189671401
ASDURF_chr2_189656459_189671401	0/0	c0004	291	1	1	0	0	0	0	copy fasta	ASDURF	chr2	189656459	189671401
ASF1A_chr6_118889152_118914171	1/1	c0001	615	400	92	70	178	14	44	copy fasta	ASF1A	chr6	118889152	118914171
ASF1B_chr19_14114512_14141589	1/1	c0001	609	252	57	49	103	12	29	copy fasta	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	c0002	609	78	32	21	16	2	7	copy fasta	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	c0003	609	3	3	0	0	0	0	copy fasta	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	c0004	609	1	0	0	1	0	0	copy fasta	ASF1B	chr19	14114512	14141589
ASGR1_chr17_7168431_7184370	1/1	c0001	876	320	82	60	124	16	36	copy fasta	ASGR1	chr17	7168431	7184370
ASGR1_chr17_7168431_7184370	0/0	c0002	876	104	5	20	71	2	6	copy fasta	ASGR1	chr17	7168431	7184370
ASGR1_chr17_7168431_7184370	0/0	c0003	876	15	7	1	5	0	2	copy fasta	ASGR1	chr17	7168431	7184370
ASGR1_chr17_7168431_7184370	0/0	c0004	876	1	0	1	0	0	0	copy fasta	ASGR1	chr17	7168431	7184370
ASGR1_chr17_7168431_7184370	0/0	c0005	876	1	1	0	0	0	0	copy fasta	ASGR1	chr17	7168431	7184370
ASGR1_chr17_7168431_7184370	0/0	c0006	876	1	1	0	0	0	0	copy fasta	ASGR1	chr17	7168431	7184370
ASGR2_chr17_7096326_7119822	1/1	c0001	921	351	67	65	158	14	45	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	c0002	921	39	14	6	19	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	c0003	921	9	0	1	7	0	1	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	c0004	921	7	7	0	0	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	c0005	921	4	0	1	0	3	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	c0006	921	4	4	0	0	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	c0007	921	3	0	1	2	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	c0008	921	3	3	0	0	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	c0009	921	2	0	0	2	0	0	copy fasta	ASGR2	chr17	7096326	7119822