JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAPGEF2_chr4_159098079_159365173	0/0	c0003	4983	12	11	1	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	c0004	4983	2	0	1	0	1	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	c0005	4983	2	2	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	c0006	4983	2	2	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	c0007	4983	2	2	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	c0008	4983	1	0	1	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	c0009	4983	1	0	0	1	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	c0010	4983	1	0	0	1	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	c0011	4983	1	1	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF3_chr12_47729363_47763880	0/0	c0001	2772	277	47	48	139	11	32	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0002	2772	80	15	15	33	5	12	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/1	c0003	2772	35	12	10	6	2	4	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0004	2772	8	7	1	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0005	2772	4	0	0	4	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0006	2778	3	3	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0007	2772	2	0	0	2	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0008	2772	2	0	0	2	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0009	2772	2	2	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0010	2772	2	2	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0011	2772	1	1	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0012	2772	1	1	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0013	2772	1	1	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0014	2772	1	0	0	1	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0015	2772	1	1	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0016	2772	1	0	0	1	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0017	2772	1	1	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0018	2772	1	1	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	1/0	c0019	2772	1	0	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0020	2772	1	1	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0021	2772	1	0	0	1	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0022	2772	1	0	0	1	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0023	2772	1	1	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0024	2772	1	0	0	1	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	c0025	2772	1	0	0	1	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF4_chr2_172730845_173057893	1/0	c0001	3036	146	35	27	45	6	32	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	c0002	3036	8	8	0	0	0	0	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	c0003	3036	3	3	0	0	0	0	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	c0004	3036	2	0	0	1	0	1	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	c0005	3036	2	2	0	0	0	0	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/1	c0006	3036	2	0	0	0	0	1	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	c0007	3036	2	0	1	0	0	1	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	c0008	3036	2	2	0	0	0	0	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	c0009	3036	1	1	0	0	0	0	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	c0010	3036	1	1	0	0	0	0	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	c0011	3036	1	0	0	0	0	1	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	c0012	3036	1	0	1	0	0	0	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	c0013	3036	1	1	0	0	0	0	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	c0014	3036	1	0	0	0	0	1	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	c0015	3036	1	0	0	0	0	1	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	c0016	3036	1	0	0	0	0	1	copy fasta	RAPGEF4	chr2	172730845	173057893