JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAPGEF4_chr2_172730845_173057893	0/0	c0017	3036	1	0	0	0	0	1	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	c0018	3036	1	0	1	0	0	0	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	c0019	3036	1	1	0	0	0	0	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF5_chr7_22113236_22362154	0/1	c0001	2652	156	47	24	65	5	14	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	1/0	c0002	2652	139	28	20	69	4	17	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	c0003	2652	8	3	0	1	2	2	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	c0004	2652	5	4	1	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	c0005	2652	3	0	0	3	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	c0006	2652	2	0	2	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	c0007	2652	2	2	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	c0008	2652	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	c0009	2652	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	c0010	2652	1	0	0	0	0	1	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	c0011	2652	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	c0012	2652	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	c0013	2652	1	0	1	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	c0014	2652	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	c0015	2652	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	c0016	2652	1	0	0	0	0	1	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	c0017	2652	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	c0018	2652	1	0	0	0	0	1	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	c0019	2652	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	c0020	2652	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	c0021	2652	1	0	0	0	1	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	c0022	2652	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF6_chr5_131418921_131640229	0/1	c0001	4806	257	51	50	130	2	23	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	1/0	c0002	4806	22	3	3	11	2	2	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	c0003	4806	15	10	5	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	c0004	4806	13	10	3	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	c0005	4806	5	4	1	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	c0006	4806	3	3	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	c0007	4806	1	1	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	c0008	4806	1	0	0	0	0	1	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	c0009	4806	1	0	0	1	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	c0010	4806	1	0	1	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	c0011	4806	1	0	1	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	c0012	4806	1	0	0	1	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	c0013	4806	1	0	0	1	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	c0014	4806	1	1	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	c0015	4806	1	1	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEFL1_chr17_40172470_40200650	1/1	c0001	1989	291	80	61	111	9	28	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	c0002	1989	6	0	0	6	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	c0003	1989	5	5	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	c0004	1989	3	3	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	c0005	1989	2	0	1	0	1	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	c0006	1989	2	2	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	c0007	1989	2	0	0	2	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	c0008	1989	1	0	0	1	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	c0009	1989	1	0	0	1	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	c0010	1989	1	1	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650