JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAPGEFL1_chr17_40172470_40200650	0/0	c0011	1989	1	1	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	c0012	2014	1	0	0	1	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPH1_chr2_203428682_203540301	1/0	c0001	3753	100	21	17	46	5	10	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/1	c0002	3753	73	5	17	33	6	11	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0003	3753	28	16	2	10	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0004	3753	16	13	3	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0005	3754	11	3	1	5	0	2	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0006	3754	10	1	2	6	1	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0007	3753	9	8	1	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0008	3753	4	0	0	4	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0009	3754	3	1	0	2	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0010	3753	3	0	3	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0011	3753	3	0	1	2	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0012	3754	3	1	0	1	0	1	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0013	3755	2	0	1	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0014	3753	2	0	0	2	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0015	3753	2	0	2	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0016	3755	2	0	0	2	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0017	3754	2	2	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0018	3754	2	2	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0019	3753	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0020	3753	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0021	3753	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0022	3755	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0023	3754	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0024	3753	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0025	3755	1	0	1	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0026	3753	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0027	3753	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0028	3754	1	0	1	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0029	3753	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0030	3753	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0031	3754	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0032	3753	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	c0033	3753	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPSN_chr11_47432764_47454136	0/0	c0001	1239	230	28	37	123	9	33	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	1/0	c0002	1239	115	50	5	55	1	3	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/0	c0003	1239	26	1	15	2	5	3	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/1	c0004	1239	14	1	7	1	1	3	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/0	c0005	1239	5	5	0	0	0	0	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/0	c0006	1239	2	0	2	0	0	0	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/0	c0007	1239	2	2	0	0	0	0	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/0	c0008	1239	1	0	0	1	0	0	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/0	c0009	1239	1	0	0	1	0	0	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/0	c0010	1239	1	0	0	1	0	0	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/0	c0011	1239	1	0	1	0	0	0	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/0	c0012	1239	1	1	0	0	0	0	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/0	c0013	1239	1	0	0	1	0	0	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/0	c0014	1239	1	0	1	0	0	0	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/0	c0015	1239	1	0	0	1	0	0	copy fasta	RAPSN	chr11	47432764	47454136