JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RARA_chr17_40304180_40362643	1/1	c0001	1389	256	69	48	99	9	29	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	c0002	1390	14	6	4	3	0	1	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	c0003	1389	7	7	0	0	0	0	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	c0004	1389	3	0	2	0	1	0	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	c0005	1389	3	3	0	0	0	0	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	c0006	1389	1	0	1	0	0	0	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	c0007	1389	1	0	1	0	0	0	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	c0008	1389	1	1	0	0	0	0	copy fasta	RARA	chr17	40304180	40362643
RARB_chr3_25423263_25602932	1/1	c0001	1347	286	83	64	105	6	26	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	c0002	1347	2	0	0	2	0	0	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	c0003	1347	1	1	0	0	0	0	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	c0004	1347	1	0	0	1	0	0	copy fasta	RARB	chr3	25423263	25602932
RARG_chr12_53205569_53237209	0/0	c0001	1365	321	84	56	148	4	29	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	c0002	1365	25	5	7	0	0	13	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	c0003	1365	4	4	0	0	0	0	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	c0004	1365	4	1	1	0	0	2	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	c0005	1365	1	1	0	0	0	0	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	c0006	1365	1	1	0	0	0	0	copy fasta	RARG	chr12	53205569	53237209
RARRES1_chr3_158691892_158737457	1/1	c0001	885	216	22	37	121	7	27	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	c0002	885	64	36	14	2	5	7	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	c0003	885	52	5	10	31	2	4	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	c0004	885	18	16	2	0	0	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	c0005	885	6	6	0	0	0	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	c0006	885	4	2	2	0	0	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	c0007	885	4	0	1	0	1	2	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	c0008	885	3	3	0	0	0	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	c0009	872	3	0	0	3	0	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	c0010	885	3	2	0	1	0	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	c0011	885	1	0	0	0	1	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	c0012	885	1	1	0	0	0	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	c0013	885	1	0	0	1	0	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	c0014	885	1	1	0	0	0	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	c0015	885	1	0	0	0	1	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	c0016	885	1	0	0	0	1	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	c0017	885	1	0	0	1	0	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES2_chr7_150333329_150346629	1/0	c0001	492	218	35	40	103	8	31	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/1	c0002	492	169	52	15	86	4	11	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/0	c0003	492	6	0	0	6	0	0	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/0	c0004	492	5	5	0	0	0	0	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/0	c0005	492	3	0	0	3	0	0	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/0	c0006	492	1	0	0	1	0	0	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/0	c0007	492	1	0	0	1	0	0	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/0	c0008	492	1	0	1	0	0	0	copy fasta	RARRES2	chr7	150333329	150346629
RARS1_chr5_168481471_168524301	0/0	c0001	1983	234	73	35	102	3	21	copy fasta	RARS1	chr5	168481471	168524301
RARS1_chr5_168481471_168524301	1/1	c0002	1983	50	1	13	14	4	16	copy fasta	RARS1	chr5	168481471	168524301
RARS1_chr5_168481471_168524301	0/0	c0003	1983	34	0	11	21	0	2	copy fasta	RARS1	chr5	168481471	168524301
RARS1_chr5_168481471_168524301	0/0	c0004	1983	32	17	2	9	1	3	copy fasta	RARS1	chr5	168481471	168524301
RARS1_chr5_168481471_168524301	0/0	c0005	1983	22	0	3	18	0	1	copy fasta	RARS1	chr5	168481471	168524301
RARS1_chr5_168481471_168524301	0/0	c0006	1983	12	1	6	0	2	3	copy fasta	RARS1	chr5	168481471	168524301
RARS1_chr5_168481471_168524301	0/0	c0007	1983	4	4	0	0	0	0	copy fasta	RARS1	chr5	168481471	168524301