JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RARS1_chr5_168481471_168524301	0/0	c0008	1983	2	0	2	0	0	0	copy fasta	RARS1	chr5	168481471	168524301
RARS1_chr5_168481471_168524301	0/0	c0009	1983	2	0	0	2	0	0	copy fasta	RARS1	chr5	168481471	168524301
RARS1_chr5_168481471_168524301	0/0	c0010	1983	1	0	0	1	0	0	copy fasta	RARS1	chr5	168481471	168524301
RARS1_chr5_168481471_168524301	0/0	c0011	1951	1	0	0	1	0	0	copy fasta	RARS1	chr5	168481471	168524301
RARS2_chr6_87508938_87594987	1/0	c0001	1737	245	52	48	103	13	28	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	c0002	1737	49	11	13	20	2	3	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/1	c0003	1737	46	14	7	19	0	5	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	c0004	1737	22	0	0	21	0	1	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	c0005	1737	4	4	0	0	0	0	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	c0006	1737	3	3	0	0	0	0	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	c0007	1737	2	1	0	0	0	1	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	c0008	1737	1	0	1	0	0	0	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	c0009	1737	1	0	0	0	1	0	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	c0010	1737	1	0	0	0	0	1	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	c0011	1737	1	0	0	1	0	0	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	c0012	1737	1	1	0	0	0	0	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	c0013	1737	1	0	0	0	0	1	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	c0014	1737	1	1	0	0	0	0	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	c0015	1737	1	0	0	1	0	0	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	c0016	1737	1	0	1	0	0	0	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	c0017	1737	1	1	0	0	0	0	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	c0018	1737	1	0	0	1	0	0	copy fasta	RARS2	chr6	87508938	87594987
RASA1_chr5_87262883_87396916	1/1	c0001	3144	268	71	48	107	9	31	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	c0002	3144	3	0	2	0	1	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	c0003	3144	2	0	0	2	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	c0004	3144	2	2	0	0	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	c0005	3144	1	0	0	0	0	1	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	c0006	3144	1	0	0	1	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	c0007	3144	1	0	0	1	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	c0008	3144	1	0	0	1	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	c0009	3144	1	1	0	0	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	c0010	3144	1	0	0	1	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	c0011	3144	1	0	0	1	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA2_chr3_141482027_141620344	1/0	c0001	2550	119	23	18	56	6	15	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	c0002	2550	76	29	18	15	6	8	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/1	c0003	2550	56	0	14	38	0	3	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	c0004	2550	24	22	2	0	0	0	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	c0005	2550	1	0	0	1	0	0	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	c0006	2550	1	1	0	0	0	0	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	c0007	2550	1	1	0	0	0	0	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	c0008	2550	1	0	0	1	0	0	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	c0009	2550	1	0	0	1	0	0	copy fasta	RASA2	chr3	141482027	141620344
RASA3_chr13_113972783_114137623	0/0	c0001	2505	38	16	12	7	0	3	copy fasta	RASA3	chr13	113972783	114137623
RASA3_chr13_113972783_114137623	1/0	c0002	2505	14	2	7	4	0	0	copy fasta	RASA3	chr13	113972783	114137623
RASA3_chr13_113972783_114137623	0/0	c0003	2505	4	0	2	2	0	0	copy fasta	RASA3	chr13	113972783	114137623
RASA3_chr13_113972783_114137623	0/0	c0004	2505	3	3	0	0	0	0	copy fasta	RASA3	chr13	113972783	114137623
RASA3_chr13_113972783_114137623	0/0	c0005	2505	2	0	0	0	0	2	copy fasta	RASA3	chr13	113972783	114137623
RASA3_chr13_113972783_114137623	0/0	c0006	2505	1	0	0	1	0	0	copy fasta	RASA3	chr13	113972783	114137623
RASA3_chr13_113972783_114137623	0/0	c0007	2505	1	0	0	0	0	1	copy fasta	RASA3	chr13	113972783	114137623
RASA3_chr13_113972783_114137623	0/0	c0008	2505	1	0	0	0	0	1	copy fasta	RASA3	chr13	113972783	114137623