JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RASA3_chr13_113972783_114137623	0/0	c0009	2505	1	0	1	0	0	0	copy fasta	RASA3	chr13	113972783	114137623
RASA3_chr13_113972783_114137623	0/0	c0010	2505	1	0	0	0	0	1	copy fasta	RASA3	chr13	113972783	114137623
RASA3_chr13_113972783_114137623	0/0	c0011	2505	1	1	0	0	0	0	copy fasta	RASA3	chr13	113972783	114137623
RASA4B_chr7_102474976_102522777	0/0	c0001	2412	15	0	5	7	1	2	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0002	2412	7	2	1	3	1	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0003	2412	4	4	0	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	1/0	c0004	2412	4	2	1	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0005	2412	4	4	0	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0006	2412	2	0	0	1	0	1	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0007	2412	2	1	0	1	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0008	2412	2	0	2	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0009	2412	2	0	2	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0010	2412	1	0	0	1	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0011	2412	1	1	0	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0012	2412	1	1	0	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0013	2412	1	0	0	0	1	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0014	2412	1	0	0	1	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0015	2412	1	0	1	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0016	2412	1	0	0	0	0	1	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0017	2412	1	0	0	0	1	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0018	2412	1	0	1	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0019	2412	1	0	0	0	0	1	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0020	2412	1	0	1	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0021	2412	1	0	0	0	0	1	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0022	2412	1	1	0	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0023	2412	1	1	0	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0024	2412	1	1	0	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0025	2412	1	1	0	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	c0026	2412	1	1	0	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4_chr7_102574646_102621756	0/0	c0001	2412	13	1	1	7	0	4	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	c0002	2412	12	0	1	8	1	2	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	c0003	2412	9	0	1	8	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	c0004	2412	8	0	3	3	0	2	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	c0005	2274	6	0	3	2	0	1	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	c0006	2412	5	1	2	2	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	c0007	2412	5	0	2	3	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	c0008	2412	4	0	0	4	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	c0009	2274	3	0	1	2	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	c0010	2412	3	1	0	2	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	c0011	2412	2	2	0	0	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	c0012	2412	2	0	0	1	1	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	c0013	2412	2	0	0	2	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	c0014	2412	2	0	0	1	0	1	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	c0015	2412	2	0	2	0	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	c0016	2412	2	0	1	0	1	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	c0017	2412	2	1	0	1	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	c0018	2412	2	2	0	0	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	c0019	2412	2	0	1	1	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	c0020	2412	1	1	0	0	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	c0021	2412	1	0	1	0	0	0	copy fasta	RASA4	chr7	102574646	102621756