JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RASAL1_chr12_113094278_113140761	0/0	c0009	2418	1	1	0	0	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	c0010	2418	1	0	0	0	1	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	c0011	2418	1	0	0	0	0	1	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	c0012	2418	1	0	1	0	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	c0013	2418	1	0	1	0	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	c0014	2418	1	0	0	1	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	c0015	2418	1	0	0	1	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	c0016	2418	1	0	0	1	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	c0017	2418	1	1	0	0	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	c0018	2418	1	1	0	0	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	c0019	2418	1	1	0	0	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	c0020	2418	1	0	0	1	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	c0021	2418	1	1	0	0	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	c0022	2418	1	1	0	0	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	c0023	2418	1	0	0	0	0	1	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	c0024	2418	1	1	0	0	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	c0025	2418	1	0	0	0	0	1	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	c0026	2418	1	1	0	0	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL2_chr1_178089104_178483850	1/1	c0001	3843	151	64	34	37	4	10	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	c0002	3843	10	3	1	5	0	1	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	c0003	3843	6	5	1	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	c0004	3843	4	0	0	4	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	c0005	3843	1	0	1	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	c0006	3843	1	1	0	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	c0007	3843	1	1	0	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	c0008	3843	1	0	1	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	c0009	3843	1	0	0	1	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	c0010	3843	1	0	0	1	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	c0011	3843	1	1	0	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	c0012	3843	1	0	0	0	0	1	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	c0013	3843	1	1	0	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL3_chr19_15446624_15469544	1/1	c0001	3036	228	38	44	104	11	29	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0002	3036	62	26	13	20	1	2	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0003	3036	30	8	7	8	4	3	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0004	3036	9	3	0	0	0	6	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0005	3036	8	0	2	6	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0006	3036	7	0	6	0	1	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0007	3037	6	1	2	3	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0008	3036	4	4	0	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0009	3036	3	0	0	3	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0010	3036	2	2	0	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0011	3036	2	2	0	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0012	3037	2	1	0	1	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0013	3036	2	0	0	2	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0014	3036	1	0	1	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0015	3036	1	1	0	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0016	3036	1	0	0	0	1	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0017	3036	1	0	0	1	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0018	3036	1	0	0	1	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0019	3036	1	1	0	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544