JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RASAL3_chr19_15446624_15469544	0/0	c0020	3036	1	1	0	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0021	3036	1	0	0	1	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0022	3036	1	0	0	0	0	1	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0023	3036	1	0	0	0	0	1	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0024	3036	1	1	0	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0025	3036	1	0	1	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0026	3036	1	1	0	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0027	3036	1	0	0	1	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0028	3036	1	0	1	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0029	3036	1	0	1	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0030	3036	1	1	0	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0031	3036	1	0	0	1	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	c0032	3036	1	1	0	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASD1_chr17_17489437_17501395	1/1	c0001	846	428	93	82	191	16	44	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	0/0	c0002	840	3	3	0	0	0	0	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	0/0	c0003	846	1	1	0	0	0	0	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	0/0	c0004	858	1	0	0	1	0	0	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	0/0	c0005	846	1	1	0	0	0	0	copy fasta	RASD1	chr17	17489437	17501395
RASD2_chr22_35535831_35558999	1/0	c0001	801	393	81	76	170	16	49	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/1	c0002	801	12	6	3	0	2	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	c0003	801	2	1	1	0	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	c0004	801	1	0	0	1	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	c0005	801	1	0	0	0	0	1	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	c0006	801	1	0	0	1	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASEF_chr9_82974590_83068142	0/1	c0001	2223	172	37	28	85	5	16	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	1/0	c0002	2223	139	36	26	58	5	13	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	c0003	2223	6	6	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	c0004	2223	5	3	1	0	0	1	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	c0005	2223	2	2	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	c0006	2223	2	2	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	c0007	2223	2	2	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	c0008	2223	1	0	1	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	c0009	2223	1	1	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	c0010	2223	1	1	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	c0011	2223	1	1	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	c0012	2223	1	1	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	c0013	2223	1	0	0	1	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASGEF1A_chr10_43189535_43272065	1/1	c0001	1446	304	86	65	108	14	29	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	c0002	1446	33	0	0	29	0	4	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	c0003	1446	10	3	2	1	0	4	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	c0004	1446	1	0	0	0	0	1	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	c0005	1446	1	0	1	0	0	0	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	c0006	1446	1	1	0	0	0	0	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1B_chr4_81421393_81476907	1/1	c0001	1422	311	87	60	108	16	38	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	c0002	1422	1	1	0	0	0	0	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	c0003	1422	1	1	0	0	0	0	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	c0004	1422	1	0	0	0	0	1	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	c0005	1422	1	0	0	0	0	1	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	c0006	1422	1	1	0	0	0	0	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1C_chr5_180095795_180214211	0/0	c0001	1401	167	27	33	78	5	24	copy fasta	RASGEF1C	chr5	180095795	180214211