JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RASGEF1C_chr5_180095795_180214211	0/0	c0002	1401	132	52	27	26	7	20	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	1/0	c0003	1401	41	10	9	16	3	2	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	c0004	1401	24	4	8	10	1	1	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	c0005	1401	3	3	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/1	c0006	1401	1	0	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	c0007	1401	1	0	1	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	c0008	1401	1	0	0	0	0	1	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGRF1_chr15_78954906_79095780	1/1	c0001	3774	188	38	36	81	8	23	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	c0002	3774	72	36	12	19	1	4	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	c0003	3774	19	1	7	7	1	3	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	c0004	3774	15	0	3	6	2	4	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	c0005	3774	4	4	0	0	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	c0006	3774	2	2	0	0	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	c0007	3774	2	2	0	0	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	c0008	3774	1	1	0	0	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	c0009	3774	1	0	0	0	0	1	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	c0010	3774	1	0	0	0	1	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	c0011	3774	1	0	0	1	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	c0012	3774	1	0	0	0	0	1	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	c0013	3774	1	0	0	0	0	1	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	c0014	3774	1	0	1	0	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	c0015	3774	1	0	1	0	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	c0016	3774	1	1	0	0	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	c0017	3774	1	1	0	0	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	c0018	3774	1	0	0	0	0	1	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	c0019	3774	1	0	0	0	1	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF2_chr5_80955363_81235162	1/0	c0001	3714	122	14	30	47	9	21	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0002	3714	77	27	11	28	2	9	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0003	3714	15	13	2	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0004	3714	12	11	1	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/1	c0005	3714	10	1	3	1	1	3	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0006	3714	8	0	3	5	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0007	3714	7	7	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0008	3714	4	4	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0009	3714	3	1	1	0	0	1	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0010	3714	3	3	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0011	3714	2	2	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0012	3714	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0013	3714	1	0	0	1	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0014	3714	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0015	3714	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0016	3714	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0017	3714	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0018	3714	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0019	3714	1	0	0	1	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0020	3714	1	0	1	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0021	3714	1	0	0	1	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0022	3714	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0023	3714	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	c0024	3714	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162