JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ASGR2_chr17_7096326_7119822	0/0	c0010	921	2	2	0	0	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	c0011	921	2	2	0	0	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	c0012	921	1	0	0	1	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	c0013	921	1	0	0	0	1	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	c0014	921	1	0	0	1	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	c0015	921	1	1	0	0	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	c0016	921	1	0	0	1	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	c0017	921	1	0	0	1	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASH1L_chr1_155330268_155567803	0/1	c0001	8895	147	40	25	53	8	20	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	1/0	c0002	8895	14	13	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	c0003	8895	4	4	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	c0004	8895	3	3	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	c0005	8895	2	1	1	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	c0006	8895	1	1	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	c0007	8895	1	1	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	c0008	8895	1	1	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	c0009	8895	1	0	1	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	c0010	8895	1	0	1	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	c0011	8895	1	0	0	1	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	c0012	8895	1	1	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	c0013	8895	1	1	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	c0014	8895	1	1	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	c0015	8895	1	1	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	c0016	8895	1	0	0	0	0	1	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	c0017	8895	1	0	0	0	0	1	copy fasta	ASH1L	chr1	155330268	155567803
ASH2L_chr8_38100529_38145080	0/1	c0001	1887	236	61	46	97	8	23	copy fasta	ASH2L	chr8	38100529	38145080
ASH2L_chr8_38100529_38145080	0/0	c0002	1887	65	1	10	51	0	3	copy fasta	ASH2L	chr8	38100529	38145080
ASH2L_chr8_38100529_38145080	1/0	c0003	1887	15	12	1	1	0	0	copy fasta	ASH2L	chr8	38100529	38145080
ASH2L_chr8_38100529_38145080	0/0	c0004	1887	3	3	0	0	0	0	copy fasta	ASH2L	chr8	38100529	38145080
ASH2L_chr8_38100529_38145080	0/0	c0005	1887	3	0	3	0	0	0	copy fasta	ASH2L	chr8	38100529	38145080
ASH2L_chr8_38100529_38145080	0/0	c0006	1887	3	3	0	0	0	0	copy fasta	ASH2L	chr8	38100529	38145080
ASH2L_chr8_38100529_38145080	0/0	c0007	1887	2	0	0	2	0	0	copy fasta	ASH2L	chr8	38100529	38145080
ASH2L_chr8_38100529_38145080	0/0	c0008	1887	1	1	0	0	0	0	copy fasta	ASH2L	chr8	38100529	38145080
ASH2L_chr8_38100529_38145080	0/0	c0009	1876	1	1	0	0	0	0	copy fasta	ASH2L	chr8	38100529	38145080
ASH2L_chr8_38100529_38145080	0/0	c0010	1887	1	0	0	1	0	0	copy fasta	ASH2L	chr8	38100529	38145080
ASIC1_chr12_50052596_50088611	0/1	c0001	1587	248	59	54	92	11	31	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	1/0	c0002	1587	42	6	11	23	1	0	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	c0003	1587	14	13	0	1	0	0	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	c0004	1587	9	8	1	0	0	0	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	c0005	1587	4	0	0	4	0	0	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	c0006	1587	2	0	0	1	0	1	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	c0007	1587	2	2	0	0	0	0	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	c0008	1587	1	1	0	0	0	0	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	c0009	1587	1	0	0	1	0	0	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	c0010	1587	1	1	0	0	0	0	copy fasta	ASIC1	chr12	50052596	50088611
ASIC2_chr17_33008087_33298295	1/0	c0001	1692	93	31	24	21	4	12	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	c0002	1692	57	24	10	23	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	c0003	1692	47	7	8	20	3	9	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/1	c0004	1692	38	11	7	12	2	5	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	c0005	1692	2	0	1	0	1	0	copy fasta	ASIC2	chr17	33008087	33298295