JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RASGRP1_chr15_38483103_38569814	1/1	c0001	2394	285	68	45	132	14	24	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	c0002	2394	34	14	10	1	2	7	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	c0003	2394	9	0	5	4	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	c0004	2394	6	6	0	0	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	c0005	2394	5	5	0	0	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	c0006	2394	3	0	0	3	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	c0007	2394	1	1	0	0	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	c0008	2394	1	0	0	1	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	c0009	2394	1	0	0	1	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	c0010	2394	1	1	0	0	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	c0011	2394	1	0	0	1	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	c0012	2394	1	0	0	0	0	1	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	c0013	2394	1	1	0	0	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	c0014	2394	1	0	0	1	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP2_chr11_64721911_64749142	1/1	c0001	1830	212	79	26	74	7	24	copy fasta	RASGRP2	chr11	64721911	64749142
RASGRP2_chr11_64721911_64749142	0/0	c0002	1830	73	5	13	45	3	7	copy fasta	RASGRP2	chr11	64721911	64749142
RASGRP2_chr11_64721911_64749142	0/0	c0003	1830	2	2	0	0	0	0	copy fasta	RASGRP2	chr11	64721911	64749142
RASGRP2_chr11_64721911_64749142	0/0	c0004	1830	2	1	1	0	0	0	copy fasta	RASGRP2	chr11	64721911	64749142
RASGRP2_chr11_64721911_64749142	0/0	c0005	1830	1	0	0	0	0	1	copy fasta	RASGRP2	chr11	64721911	64749142
RASGRP2_chr11_64721911_64749142	0/0	c0006	1830	1	0	0	1	0	0	copy fasta	RASGRP2	chr11	64721911	64749142
RASGRP2_chr11_64721911_64749142	0/0	c0007	1830	1	0	0	1	0	0	copy fasta	RASGRP2	chr11	64721911	64749142
RASGRP2_chr11_64721911_64749142	0/0	c0008	1830	1	0	0	1	0	0	copy fasta	RASGRP2	chr11	64721911	64749142
RASGRP2_chr11_64721911_64749142	0/0	c0009	1830	1	1	0	0	0	0	copy fasta	RASGRP2	chr11	64721911	64749142
RASGRP3_chr2_33471649_33569731	1/1	c0001	2073	262	57	41	127	9	26	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	c0002	2073	76	13	4	57	0	2	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	c0003	2073	15	15	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	c0004	2073	3	3	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	c0005	2073	2	0	0	0	2	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	c0006	2073	2	2	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	c0007	2073	1	0	0	0	0	1	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	c0008	2073	1	0	1	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	c0009	2073	1	1	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	c0010	2073	1	0	0	1	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	c0011	2073	1	1	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	c0012	2073	1	0	0	1	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	c0013	2073	1	0	0	0	1	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	c0014	2073	1	0	0	1	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	c0015	2073	1	0	0	0	0	1	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	c0016	2073	1	0	0	1	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP4_chr19_38404058_38431219	0/0	c0001	2022	128	17	20	63	4	24	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	1/1	c0002	2022	97	3	34	40	6	12	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0003	2022	79	26	8	44	0	1	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0004	2022	38	19	6	9	0	4	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0005	2022	16	0	0	16	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0006	2022	13	11	1	0	1	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0007	2022	7	3	2	0	0	2	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0008	2022	5	0	0	5	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0009	2022	3	3	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0010	2022	3	3	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0011	2022	2	0	2	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219