JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RASGRP4_chr19_38404058_38431219	0/0	c0012	2022	2	0	0	0	0	2	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0013	2022	2	0	0	2	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0014	2022	2	0	0	2	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0015	2022	2	2	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0016	2022	1	1	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0017	2022	1	0	0	1	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0018	2022	1	1	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0019	2022	1	1	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0020	2022	1	0	1	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0021	2022	1	0	0	0	1	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0022	2022	1	0	0	1	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0023	2022	1	0	0	1	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0024	2022	1	0	0	1	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0025	2022	1	0	0	0	0	1	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	c0026	2022	1	0	0	1	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASIP1_chr19_48715585_48745610	1/1	c0001	2892	258	40	39	142	5	30	copy fasta	RASIP1	chr19	48715585	48745610
RASIP1_chr19_48715585_48745610	0/0	c0002	2892	50	11	15	11	5	8	copy fasta	RASIP1	chr19	48715585	48745610
RASIP1_chr19_48715585_48745610	0/0	c0003	2892	43	34	3	0	0	6	copy fasta	RASIP1	chr19	48715585	48745610
RASIP1_chr19_48715585_48745610	0/0	c0004	2892	4	4	0	0	0	0	copy fasta	RASIP1	chr19	48715585	48745610
RASIP1_chr19_48715585_48745610	0/0	c0005	2892	2	0	2	0	0	0	copy fasta	RASIP1	chr19	48715585	48745610
RASIP1_chr19_48715585_48745610	0/0	c0006	2892	1	0	0	1	0	0	copy fasta	RASIP1	chr19	48715585	48745610
RASIP1_chr19_48715585_48745610	0/0	c0007	2892	1	1	0	0	0	0	copy fasta	RASIP1	chr19	48715585	48745610
RASIP1_chr19_48715585_48745610	0/0	c0008	2892	1	0	0	1	0	0	copy fasta	RASIP1	chr19	48715585	48745610
RASIP1_chr19_48715585_48745610	0/0	c0009	2892	1	1	0	0	0	0	copy fasta	RASIP1	chr19	48715585	48745610
RASIP1_chr19_48715585_48745610	0/0	c0010	2892	1	0	1	0	0	0	copy fasta	RASIP1	chr19	48715585	48745610
RASIP1_chr19_48715585_48745610	0/0	c0011	2892	1	1	0	0	0	0	copy fasta	RASIP1	chr19	48715585	48745610
RASIP1_chr19_48715585_48745610	0/0	c0012	2892	1	0	0	1	0	0	copy fasta	RASIP1	chr19	48715585	48745610
RASL10A_chr22_29307933_29320697	1/1	c0001	612	414	80	72	196	16	48	copy fasta	RASL10A	chr22	29307933	29320697
RASL10A_chr22_29307933_29320697	0/0	c0002	612	14	14	0	0	0	0	copy fasta	RASL10A	chr22	29307933	29320697
RASL10A_chr22_29307933_29320697	0/0	c0003	612	2	0	0	2	0	0	copy fasta	RASL10A	chr22	29307933	29320697
RASL10B_chr17_35726639_35748521	1/1	c0001	612	444	98	78	209	16	41	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	c0002	612	1	0	0	1	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	c0003	612	1	0	0	0	0	1	copy fasta	RASL10B	chr17	35726639	35748521
RASL11A_chr13_27265830_27280192	1/1	c0001	729	387	85	75	171	14	40	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	c0002	729	7	5	2	0	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	c0003	729	7	6	1	0	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	c0004	729	1	0	0	1	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	c0005	729	1	0	0	1	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	c0006	729	1	1	0	0	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	c0007	729	1	0	0	1	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	c0008	729	1	0	1	0	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	c0009	729	1	0	1	0	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	c0010	729	1	1	0	0	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11B_chr4_52857317_52871835	1/1	c0001	747	419	85	76	194	18	44	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	c0002	747	5	5	0	0	0	0	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	c0003	747	3	3	0	0	0	0	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	c0004	747	1	1	0	0	0	0	copy fasta	RASL11B	chr4	52857317	52871835
RASL12_chr15_65048337_65072991	1/1	c0001	801	170	62	41	45	8	12	copy fasta	RASL12	chr15	65048337	65072991
RASL12_chr15_65048337_65072991	0/0	c0002	801	149	17	30	79	9	14	copy fasta	RASL12	chr15	65048337	65072991
RASL12_chr15_65048337_65072991	0/0	c0003	801	11	11	0	0	0	0	copy fasta	RASL12	chr15	65048337	65072991