JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RASL12_chr15_65048337_65072991	0/0	c0004	801	5	4	0	0	1	0	copy fasta	RASL12	chr15	65048337	65072991
RASL12_chr15_65048337_65072991	0/0	c0005	801	1	0	1	0	0	0	copy fasta	RASL12	chr15	65048337	65072991
RASL12_chr15_65048337_65072991	0/0	c0006	801	1	1	0	0	0	0	copy fasta	RASL12	chr15	65048337	65072991
RASL12_chr15_65048337_65072991	0/0	c0007	801	1	1	0	0	0	0	copy fasta	RASL12	chr15	65048337	65072991
RASSF10_chr11_13004316_13017119	1/1	c0001	1524	362	85	52	178	15	30	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	c0002	1524	25	0	7	10	0	8	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	c0003	1524	13	0	6	7	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	c0004	1524	8	2	4	0	2	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	c0005	1524	4	2	1	0	1	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	c0006	1524	4	4	0	0	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	c0007	1524	2	0	2	0	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	c0008	1524	1	0	0	0	0	1	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	c0009	1524	1	0	0	0	0	1	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	c0010	1524	1	0	1	0	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	c0011	1524	1	0	1	0	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	c0012	1524	1	0	1	0	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	c0013	1524	1	0	1	0	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	c0014	1524	1	1	0	0	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	c0015	1524	1	0	0	1	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF1_chr3_50324788_50345836	1/0	c0001	1023	228	60	49	73	10	35	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	c0002	1023	98	14	8	75	0	1	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/1	c0003	1023	35	1	7	16	4	6	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	c0004	1023	11	0	11	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	c0005	1023	4	4	0	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	c0006	1023	4	4	0	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	c0007	1023	3	3	0	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	c0008	1023	1	1	0	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	c0009	1023	1	0	1	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	c0010	1023	1	0	1	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	c0011	1023	1	1	0	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	c0012	1023	1	1	0	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	c0013	1023	1	0	1	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	c0014	1023	1	1	0	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF2_chr20_4775023_4828608	1/1	c0001	981	393	77	71	177	18	48	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	c0002	981	17	16	1	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	c0003	981	14	0	0	14	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	c0004	981	2	2	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	c0005	981	1	1	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	c0006	981	1	0	0	1	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	c0007	981	1	0	1	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	c0008	981	1	0	1	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF3_chr12_64605495_64702564	1/1	c0001	717	327	63	60	154	14	34	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	c0002	717	33	15	12	0	2	4	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	c0003	717	9	9	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	c0004	717	1	1	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF4_chr10_44954802_45000891	1/1	c0001	966	263	52	46	125	10	28	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	c0002	966	108	27	12	60	0	9	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	c0003	966	5	3	2	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	c0004	966	4	3	1	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	c0005	966	3	3	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891