JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RASSF4_chr10_44954802_45000891	0/0	c0006	966	2	1	1	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	c0007	966	2	2	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	c0008	966	1	0	0	0	0	1	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	c0009	966	1	0	0	1	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	c0010	966	1	0	0	0	0	1	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	c0011	966	1	1	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	c0012	966	1	1	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	c0013	966	1	0	0	0	0	1	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	c0014	966	1	0	0	1	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	c0015	966	1	1	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	c0016	966	1	0	0	1	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF5_chr1_206502531_206594448	0/1	c0001	1257	253	58	48	111	6	29	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	c0002	1257	42	13	6	21	2	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	1/0	c0003	1257	13	1	6	0	2	3	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	c0004	1257	12	12	0	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	c0005	1257	7	7	0	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	c0006	1257	4	0	0	4	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	c0007	1257	4	3	1	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	c0008	1257	2	0	2	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	c0009	1257	2	0	0	0	0	2	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	c0010	1257	1	0	0	1	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	c0011	1257	1	1	0	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	c0012	1257	1	0	0	1	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	c0013	1257	1	1	0	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	c0014	1257	1	0	1	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	c0015	1257	1	0	0	1	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	c0016	1257	1	0	0	1	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF6_chr4_73566550_73625436	1/0	c0001	1014	224	48	29	114	10	22	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/1	c0002	1014	99	25	36	26	3	8	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	c0003	1014	3	3	0	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	c0004	1014	3	1	1	0	1	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	c0005	1014	2	0	0	0	0	2	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	c0006	1014	2	0	2	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	c0007	1014	2	2	0	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	c0008	1014	1	1	0	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	c0009	1014	1	0	0	1	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	c0010	1014	1	0	0	1	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF7_chr11_555970_569025	0/0	c0001	1122	198	50	38	69	11	30	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/1	c0002	1122	57	25	21	3	5	2	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0003	1122	55	0	7	43	1	4	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0004	1122	48	0	9	31	1	7	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0005	1122	16	15	1	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0006	1122	3	2	1	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0007	1122	2	2	0	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0008	1122	1	0	0	1	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0009	1122	1	1	0	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0010	1122	1	1	0	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0011	1122	1	0	0	0	0	1	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0012	1122	1	0	0	0	0	1	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0013	1122	1	0	0	1	0	0	copy fasta	RASSF7	chr11	555970	569025