JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RASSF7_chr11_555970_569025	0/0	c0014	1121	1	1	0	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0015	1122	1	1	0	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0016	1122	1	0	1	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0017	1122	1	0	0	0	0	1	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0018	1122	1	0	1	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0019	1118	1	0	1	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0020	1122	1	0	0	1	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0021	1122	1	0	0	1	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0022	1122	1	0	0	1	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0023	1122	1	0	0	1	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0024	1122	1	0	0	1	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	c0025	1122	1	0	0	1	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF8_chr12_25953682_26077869	1/1	c0001	1260	292	78	54	116	12	30	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	c0002	1260	79	0	6	68	0	5	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	c0003	1260	6	0	0	5	0	1	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	c0004	1260	5	5	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	c0005	1260	4	4	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	c0006	1260	3	3	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	c0007	1260	3	0	0	3	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	c0008	1260	2	2	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	c0009	1260	1	1	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	c0010	1260	1	1	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF9_chr12_85795703_85841409	1/1	c0001	1308	289	73	58	102	14	40	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	c0002	1308	38	4	14	18	2	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	c0003	1308	5	5	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	c0004	1308	4	0	0	4	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	c0005	1308	3	3	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	c0006	1308	2	2	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	c0007	1308	1	1	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	c0008	1308	1	1	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	c0009	1308	1	1	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RAVER1_chr19_10311212_10338529	1/1	c0001	2220	303	48	56	151	13	33	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0002	2220	68	24	20	15	2	7	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0003	2220	12	0	0	10	0	2	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0004	2220	10	8	2	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0005	2220	9	0	0	9	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0006	2220	4	0	3	0	1	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0007	2220	3	0	0	3	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0008	2220	2	0	1	1	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0009	2220	2	2	0	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0010	2220	2	0	0	2	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0011	2220	2	0	0	2	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0012	2220	2	0	0	2	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0013	2220	2	0	0	0	2	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0014	2220	1	0	0	1	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0015	2220	1	1	0	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0016	2220	1	1	0	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0017	2220	1	0	0	1	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0018	2220	1	0	1	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0019	2220	1	0	0	1	0	0	copy fasta	RAVER1	chr19	10311212	10338529