JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAVER1_chr19_10311212_10338529	0/0	c0020	2220	1	0	1	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0021	2220	1	0	0	1	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0022	2220	1	0	0	1	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0023	2220	1	1	0	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0024	2220	1	0	0	1	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0025	2220	1	1	0	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0026	2220	1	1	0	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0027	2220	1	1	0	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0028	2220	1	1	0	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0029	2217	1	0	0	1	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	c0030	2220	1	1	0	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER2_chr1_64740075_64838232	1/1	c0001	2076	347	84	59	154	14	34	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	c0002	2076	5	4	1	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	c0003	2076	2	0	2	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	c0004	2076	2	2	0	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	c0005	2076	1	0	1	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	c0006	2076	1	1	0	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	c0007	2076	1	0	0	1	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	c0008	2076	1	1	0	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	c0009	2038	1	0	1	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	c0010	2076	1	1	0	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	c0011	2076	1	1	0	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	c0012	2076	1	0	0	1	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAX2_chr19_3764089_3777228	1/0	c0001	555	410	97	75	175	18	44	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	c0002	556	17	3	2	8	0	4	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	c0003	555	2	0	0	2	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/1	c0004	555	2	0	1	0	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	c0005	555	1	0	0	1	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	c0006	556	1	0	0	1	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	c0007	555	1	0	0	1	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	c0008	555	1	0	0	1	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	c0009	555	1	0	0	1	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX_chr18_59262038_59278454	1/1	c0001	1041	373	68	65	187	14	37	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	c0002	1041	91	14	17	44	4	12	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	c0003	1041	11	10	0	0	0	1	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	c0004	1041	4	4	0	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	c0005	1041	2	0	0	2	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	c0006	1041	1	1	0	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	c0007	1041	1	0	0	1	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	c0008	1041	1	1	0	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RB1CC1_chr8_52617458_52719435	1/0	c0001	4785	127	55	20	30	4	17	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	c0002	4785	78	6	16	42	3	11	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/1	c0003	4785	76	12	22	27	3	11	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	c0004	4785	5	0	0	5	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	c0005	4785	5	4	1	0	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	c0006	4785	2	0	1	0	0	1	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	c0007	4785	2	0	0	2	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	c0008	4785	2	1	1	0	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	c0009	4785	1	0	0	1	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	c0010	4785	1	0	1	0	0	0	copy fasta	RB1CC1	chr8	52617458	52719435