JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RB1CC1_chr8_52617458_52719435	0/0	c0011	4785	1	0	0	1	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	c0012	4785	1	1	0	0	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	c0013	4785	1	1	0	0	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	c0014	4785	1	1	0	0	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	c0015	4785	1	1	0	0	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	c0016	4785	1	0	0	1	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	c0017	4785	1	0	0	1	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1_chr13_48298751_48486890	1/1	c0001	2787	296	83	50	129	6	26	copy fasta	RB1	chr13	48298751	48486890
RB1_chr13_48298751_48486890	0/0	c0002	2778	4	4	0	0	0	0	copy fasta	RB1	chr13	48298751	48486890
RB1_chr13_48298751_48486890	0/0	c0003	2787	2	2	0	0	0	0	copy fasta	RB1	chr13	48298751	48486890
RB1_chr13_48298751_48486890	0/0	c0004	2787	1	0	0	1	0	0	copy fasta	RB1	chr13	48298751	48486890
RB1_chr13_48298751_48486890	0/0	c0005	2787	1	0	1	0	0	0	copy fasta	RB1	chr13	48298751	48486890
RB1_chr13_48298751_48486890	0/0	c0006	2787	1	0	1	0	0	0	copy fasta	RB1	chr13	48298751	48486890
RB1_chr13_48298751_48486890	0/0	c0007	2787	1	1	0	0	0	0	copy fasta	RB1	chr13	48298751	48486890
RBAK_chr7_5040860_5074487	1/1	c0001	2145	170	20	32	89	7	20	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	c0002	2145	115	45	14	46	3	7	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	c0003	2145	81	5	7	60	1	8	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	c0004	2145	21	4	8	2	4	3	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	c0005	2145	13	12	1	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	c0006	2145	13	1	7	0	0	5	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	c0007	2145	4	4	0	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	c0008	2145	3	0	2	0	1	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	c0009	2145	2	0	0	0	0	2	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	c0010	2145	2	0	0	2	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	c0011	2145	2	2	0	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	c0012	2145	2	2	0	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	c0013	2145	2	2	0	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	c0014	2145	1	0	0	1	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	c0015	2145	1	0	1	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	c0016	2145	1	0	1	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	c0017	2145	1	0	1	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	c0018	2145	1	1	0	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	c0019	2145	1	0	1	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	c0020	2145	1	0	0	0	0	1	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	c0021	2145	1	0	1	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBBP4_chr1_32646208_32691211	0/1	c0001	1278	270	54	49	124	14	28	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	c0002	1278	21	20	1	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	1/0	c0003	1278	17	11	5	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	c0004	1278	3	3	0	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	c0005	1278	1	0	1	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP5_chr1_205081142_205126978	1/1	c0001	1617	387	91	70	166	16	42	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	c0002	1617	2	1	1	0	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	c0003	1617	1	0	1	0	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP6_chr16_24534566_24577863	1/1	c0001	5379	213	35	27	125	6	18	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	c0002	5379	50	15	12	8	3	12	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	c0003	5379	34	10	15	1	1	7	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	c0004	5379	13	13	0	0	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	c0005	5373	5	0	3	0	0	2	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	c0006	5379	4	0	4	0	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	c0007	5379	4	4	0	0	0	0	copy fasta	RBBP6	chr16	24534566	24577863