JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RBBP6_chr16_24534566_24577863	0/0	c0008	5379	2	2	0	0	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	c0009	5379	1	0	0	0	1	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	c0010	5379	1	0	0	1	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	c0011	5379	1	0	0	1	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	c0012	5379	1	0	0	1	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	c0013	5379	1	1	0	0	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	c0014	5379	1	0	1	0	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	c0015	5379	1	0	0	1	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	c0016	5379	1	1	0	0	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	c0017	5379	1	0	0	0	0	1	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	c0018	5379	1	1	0	0	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	c0019	5379	1	0	0	0	1	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP7_chrX_16839341_16875362	1/1	c0001	1278	306	76	58	128	13	29	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	c0002	1278	4	0	0	4	0	0	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	c0003	1280	1	0	0	1	0	0	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	c0004	1277	1	0	0	1	0	0	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	c0005	1278	1	0	0	1	0	0	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	c0006	1279	1	0	0	1	0	0	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	c0007	1278	1	0	0	1	0	0	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	c0008	1278	1	0	0	0	0	1	copy fasta	RBBP7	chrX	16839341	16875362
RBBP8NL_chr20_62405237_62432539	1/0	c0001	1995	191	49	32	75	5	29	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/1	c0002	1995	106	6	14	74	1	10	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0003	1995	29	0	7	16	4	2	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0004	1995	15	4	8	0	3	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0005	1995	12	12	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0006	1995	11	0	2	9	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0007	1995	9	7	2	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0008	1995	7	0	0	7	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0009	1995	6	0	5	1	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0010	1995	6	5	1	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0011	1995	5	5	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0012	1995	4	0	4	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0013	1995	3	1	2	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0014	1995	3	0	0	0	0	3	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0015	1995	3	0	1	0	1	1	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0016	1995	2	0	1	0	1	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0017	1995	1	0	0	1	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0018	1995	1	0	1	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0019	1995	1	1	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0020	1995	1	0	0	1	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0021	1995	1	0	0	1	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0022	1995	1	1	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0023	1995	1	1	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0024	1995	1	1	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0025	1995	1	1	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0026	1995	1	0	1	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0027	1995	1	1	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0028	1995	1	0	0	0	0	1	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0029	1995	1	0	0	0	0	1	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0030	1995	1	0	1	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539