JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RBBP8NL_chr20_62405237_62432539	0/0	c0031	1995	1	0	0	0	0	1	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0032	1995	1	1	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0033	1995	1	1	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0034	1995	1	0	0	0	1	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0035	1995	1	0	0	1	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	c0036	1995	1	1	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8_chr18_22928328_23031486	1/1	c0001	2694	268	57	46	130	5	28	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	c0002	2694	43	31	6	0	2	4	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	c0003	2694	4	4	0	0	0	0	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	c0004	2694	2	2	0	0	0	0	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	c0005	2694	2	0	1	0	1	0	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	c0006	2694	2	1	0	0	0	1	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	c0007	2694	2	1	1	0	0	0	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	c0008	2694	1	0	0	1	0	0	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	c0009	2694	1	0	0	1	0	0	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	c0010	2694	1	0	0	0	0	1	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	c0011	2694	1	0	0	1	0	0	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	c0012	2694	1	0	0	1	0	0	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	c0013	2694	1	1	0	0	0	0	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	c0014	2694	1	1	0	0	0	0	copy fasta	RBBP8	chr18	22928328	23031486
RBBP9_chr20_18481540_18502225	1/1	c0001	561	450	95	78	214	16	45	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	c0002	561	2	2	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	c0003	561	1	0	0	0	0	1	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	c0004	561	1	1	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBCK1_chr20_403299_437139	1/1	c0001	1533	444	97	85	204	16	40	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	c0002	1533	4	0	1	0	0	3	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	c0003	1533	1	0	0	1	0	0	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	c0004	1533	1	1	0	0	0	0	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	c0005	1533	1	0	0	1	0	0	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	c0006	1533	1	0	0	0	0	1	copy fasta	RBCK1	chr20	403299	437139
RBFA_chr18_80029434_80055651	1/1	c0001	1032	166	54	24	66	6	14	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	c0002	1032	166	15	28	91	4	28	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	c0003	1032	56	5	17	29	3	2	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	c0004	1032	12	10	1	1	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	c0005	1032	4	4	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	c0006	1032	2	0	0	2	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	c0007	1032	2	0	0	2	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	c0008	1032	1	0	0	1	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	c0009	1032	1	0	0	0	1	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	c0010	1019	1	0	0	1	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	c0011	1032	1	0	0	1	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	c0012	1032	1	1	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	c0013	1032	1	1	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFOX1_chr16_6014024_7718340	0/0	c0001	1194	63	36	11	3	4	9	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	c0002	1194	2	2	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	c0003	1194	1	0	0	1	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	c0004	1194	1	0	0	0	0	1	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	c0005	1194	1	0	1	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_7327845_7718340	0/1	c0001	2679	100	14	19	38	8	20	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0002	2679	31	10	12	2	3	4	copy fasta	RBFOX1	chr16	7327845	7718340