JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RBFOX1_chr16_7327845_7718340	0/0	c0003	2679	19	13	3	0	0	3	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0004	2679	16	0	3	13	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0005	2679	9	9	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0006	2679	8	6	1	0	0	1	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0007	2679	5	0	0	0	1	4	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	1/0	c0008	2679	5	4	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0009	2679	5	1	0	1	1	2	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0010	2679	4	4	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0011	2679	4	1	0	1	1	1	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0012	2679	3	0	0	3	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0013	2679	2	2	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0014	2679	2	0	0	0	0	2	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0015	2679	1	0	0	1	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0016	2679	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0017	2679	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0018	2679	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0019	2679	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0020	2679	1	0	0	1	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0021	2679	1	0	0	1	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0022	2679	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0023	2679	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0024	2679	1	0	0	1	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0025	2679	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0026	2679	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0027	2679	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0028	2679	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0029	2679	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0030	2679	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0031	2679	1	0	0	0	0	1	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0032	2679	1	0	1	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0033	2679	1	0	0	0	0	1	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0034	2679	1	0	0	0	0	1	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	c0035	2679	1	0	1	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX2_chr22_35733736_36033824	0/1	c0001	1344	118	68	12	19	10	8	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	c0002	1344	1	0	0	1	0	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	1/0	c0003	1344	1	0	0	0	0	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX3_chr17_79084345_79616051	1/1	c0001	1080	125	53	27	24	6	13	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	c0002	1080	26	10	3	10	0	3	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	c0003	1080	1	0	1	0	0	0	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	c0004	1080	1	1	0	0	0	0	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	c0005	1080	1	0	1	0	0	0	copy fasta	RBFOX3	chr17	79084345	79616051
RBIS_chr8_85209048_85225374	1/1	c0001	303	365	91	66	152	14	40	copy fasta	RBIS	chr8	85209048	85225374
RBIS_chr8_85209048_85225374	0/0	c0002	303	2	0	0	2	0	0	copy fasta	RBIS	chr8	85209048	85225374
RBIS_chr8_85209048_85225374	0/0	c0003	303	1	1	0	0	0	0	copy fasta	RBIS	chr8	85209048	85225374
RBKS_chr2_27776379_27895387	1/1	c0001	969	257	71	35	120	4	25	copy fasta	RBKS	chr2	27776379	27895387
RBKS_chr2_27776379_27895387	0/0	c0002	969	3	3	0	0	0	0	copy fasta	RBKS	chr2	27776379	27895387
RBKS_chr2_27776379_27895387	0/0	c0003	969	2	0	2	0	0	0	copy fasta	RBKS	chr2	27776379	27895387
RBKS_chr2_27776379_27895387	0/0	c0004	969	2	0	1	0	0	1	copy fasta	RBKS	chr2	27776379	27895387
RBKS_chr2_27776379_27895387	0/0	c0005	969	1	1	0	0	0	0	copy fasta	RBKS	chr2	27776379	27895387
RBKS_chr2_27776379_27895387	0/0	c0006	969	1	1	0	0	0	0	copy fasta	RBKS	chr2	27776379	27895387