JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ASIC2_chr17_33008087_33298295	0/0	c0006	1692	1	1	0	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	c0007	1692	1	0	0	1	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	c0008	1692	1	0	0	1	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC3_chr7_151043531_151057754	1/0	c0001	1596	351	69	60	173	12	36	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/1	c0002	1596	25	11	3	1	3	6	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	c0003	1596	16	3	3	7	2	1	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	c0004	1590	7	0	0	7	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	c0005	1596	3	0	0	3	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	c0006	1596	3	0	2	0	0	1	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	c0007	1596	2	0	0	2	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	c0008	1596	2	0	0	2	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	c0009	1596	1	0	1	0	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	c0010	1596	1	1	0	0	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	c0011	1596	1	1	0	0	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	c0012	1596	1	1	0	0	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	c0013	1596	1	0	1	0	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	c0014	1596	1	1	0	0	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	c0015	1596	1	0	0	0	1	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	c0016	1596	1	0	0	1	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	c0017	1596	1	1	0	0	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC4_chr2_219509482_219543772	0/1	c0001	1620	100	18	22	37	3	19	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0002	1620	73	2	14	42	4	11	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0003	1620	54	2	21	23	4	4	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0004	1620	31	3	11	11	2	4	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0005	1620	25	13	6	2	1	3	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0006	1620	21	4	3	14	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	1/0	c0007	1620	14	11	1	1	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0008	1620	8	8	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0009	1620	7	3	0	4	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0010	1620	5	5	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0011	1620	5	5	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0012	1620	4	4	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0013	1620	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0014	1620	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0015	1620	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0016	1620	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0017	1620	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0018	1620	1	0	0	1	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0019	1620	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0020	1620	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0021	1620	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0022	1620	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0023	1620	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0024	1620	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0025	1620	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0026	1620	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0027	1620	1	0	0	1	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0028	1620	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0029	1620	1	0	0	1	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0030	1620	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772