JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RBKS_chr2_27776379_27895387	0/0	c0007	969	1	1	0	0	0	0	copy fasta	RBKS	chr2	27776379	27895387
RBKS_chr2_27776379_27895387	0/0	c0008	969	1	1	0	0	0	0	copy fasta	RBKS	chr2	27776379	27895387
RBL1_chr20_36991349_37100997	1/1	c0001	3207	336	74	68	136	16	40	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	c0002	3207	5	0	0	5	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	c0003	3207	3	3	0	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	c0004	3207	1	0	0	1	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	c0005	3207	1	0	0	1	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	c0006	3207	1	1	0	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	c0007	3207	1	0	0	1	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	c0008	3207	1	0	0	1	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	c0009	3207	1	1	0	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	c0010	3207	1	1	0	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	c0011	3207	1	1	0	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	c0012	3207	1	1	0	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	c0013	3207	1	0	0	1	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL2_chr16_53429471_53496648	1/0	c0001	3420	102	9	28	43	2	19	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/0	c0002	3420	76	38	8	17	3	10	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/0	c0003	3420	57	36	2	12	0	7	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/1	c0004	3420	25	1	15	0	4	4	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/0	c0005	3420	3	3	0	0	0	0	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/0	c0006	3420	3	0	0	3	0	0	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/0	c0007	3420	3	3	0	0	0	0	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/0	c0008	3420	2	0	1	0	1	0	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/0	c0009	3447	1	1	0	0	0	0	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/0	c0010	3420	1	1	0	0	0	0	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/0	c0011	3420	1	0	0	1	0	0	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/0	c0012	3420	1	0	0	1	0	0	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/0	c0013	3420	1	0	0	1	0	0	copy fasta	RBL2	chr16	53429471	53496648
RBM10_chrX_47140221_47191813	1/1	c0001	2793	214	68	35	80	7	22	copy fasta	RBM10	chrX	47140221	47191813
RBM10_chrX_47140221_47191813	0/0	c0002	2793	6	4	2	0	0	0	copy fasta	RBM10	chrX	47140221	47191813
RBM10_chrX_47140221_47191813	0/0	c0003	2793	2	0	0	2	0	0	copy fasta	RBM10	chrX	47140221	47191813
RBM10_chrX_47140221_47191813	0/0	c0004	2794	1	0	0	1	0	0	copy fasta	RBM10	chrX	47140221	47191813
RBM10_chrX_47140221_47191813	0/0	c0005	2793	1	0	0	1	0	0	copy fasta	RBM10	chrX	47140221	47191813
RBM10_chrX_47140221_47191813	0/0	c0006	2793	1	0	1	0	0	0	copy fasta	RBM10	chrX	47140221	47191813
RBM10_chrX_47140221_47191813	0/0	c0007	2798	1	0	0	1	0	0	copy fasta	RBM10	chrX	47140221	47191813
RBM11_chr21_14211157_14233372	0/1	c0001	846	289	40	42	155	14	37	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	1/0	c0002	846	112	25	23	59	0	4	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	c0003	846	36	17	6	2	4	7	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	c0004	846	7	7	0	0	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	c0005	846	3	1	2	0	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	c0006	846	2	1	1	0	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	c0007	846	2	2	0	0	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	c0008	846	2	1	1	0	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	c0009	846	2	0	0	2	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	c0010	846	1	0	0	1	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	c0011	846	1	0	0	1	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	c0012	846	1	0	1	0	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM12B_chr8_93723155_93746009	1/1	c0001	3006	259	82	52	95	9	19	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	c0002	3006	94	8	15	53	2	16	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	c0003	3006	23	2	7	12	1	1	copy fasta	RBM12B	chr8	93723155	93746009