JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RBM12B_chr8_93723155_93746009	0/0	c0004	3006	2	0	2	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	c0005	3006	2	2	0	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	c0006	3006	1	0	0	1	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	c0007	3006	1	0	0	1	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	c0008	3006	1	0	0	1	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	c0009	3006	1	1	0	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	c0010	3006	1	0	0	1	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	c0011	3006	1	0	0	1	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	c0012	3006	1	1	0	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	c0013	3006	1	0	0	1	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12_chr20_35643925_35669900	1/1	c0001	2799	175	42	32	77	6	16	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	c0002	2799	89	32	13	22	5	17	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	c0003	2799	12	0	0	11	0	1	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	c0004	2799	10	9	1	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	c0005	2805	8	0	7	0	1	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	c0006	2805	5	1	4	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	c0007	2799	5	0	0	5	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	c0008	2799	1	1	0	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	c0009	2799	1	0	1	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	c0010	2769	1	1	0	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	c0011	2799	1	0	0	1	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM14_chr11_66611630_66634934	1/1	c0001	2010	376	85	56	188	15	30	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	c0002	2010	20	4	5	1	1	9	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	c0003	2010	6	0	0	6	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	c0004	2010	1	0	0	0	0	1	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	c0005	2010	1	0	1	0	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	c0006	2010	1	1	0	0	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	c0007	2010	1	0	0	1	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	c0008	2010	1	0	0	0	0	1	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	c0009	2010	1	0	0	0	0	1	copy fasta	RBM14	chr11	66611630	66634934
RBM15B_chr3_51386285_51402908	1/1	c0001	2673	247	53	47	100	12	33	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	c0002	2673	95	9	17	65	2	2	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	c0003	2673	12	9	2	1	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	c0004	2673	10	0	0	10	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	c0005	2673	4	0	0	4	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	c0006	2673	3	0	0	3	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	c0007	2673	1	0	0	0	0	1	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	c0008	2673	1	0	0	1	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	c0009	2673	1	0	0	1	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	c0010	2673	1	0	0	0	0	1	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	c0011	2673	1	0	0	0	0	1	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	c0012	2673	1	1	0	0	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	c0013	2673	1	0	0	1	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15_chr1_110334377_110351677	0/1	c0001	2934	210	72	49	63	5	20	copy fasta	RBM15	chr1	110334377	110351677
RBM15_chr1_110334377_110351677	0/0	c0002	2934	82	0	9	56	3	14	copy fasta	RBM15	chr1	110334377	110351677
RBM15_chr1_110334377_110351677	0/0	c0003	2934	71	2	6	61	0	2	copy fasta	RBM15	chr1	110334377	110351677
RBM15_chr1_110334377_110351677	1/0	c0004	2934	63	4	14	35	3	6	copy fasta	RBM15	chr1	110334377	110351677
RBM15_chr1_110334377_110351677	0/0	c0005	2934	8	8	0	0	0	0	copy fasta	RBM15	chr1	110334377	110351677
RBM15_chr1_110334377_110351677	0/0	c0006	2934	4	0	0	1	0	3	copy fasta	RBM15	chr1	110334377	110351677
RBM15_chr1_110334377_110351677	0/0	c0007	2934	3	0	0	3	0	0	copy fasta	RBM15	chr1	110334377	110351677