JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RBM15_chr1_110334377_110351677	0/0	c0008	2934	2	2	0	0	0	0	copy fasta	RBM15	chr1	110334377	110351677
RBM15_chr1_110334377_110351677	0/0	c0009	2934	1	0	0	0	0	1	copy fasta	RBM15	chr1	110334377	110351677
RBM15_chr1_110334377_110351677	0/0	c0010	2934	1	0	0	1	0	0	copy fasta	RBM15	chr1	110334377	110351677
RBM15_chr1_110334377_110351677	0/0	c0011	2934	1	1	0	0	0	0	copy fasta	RBM15	chr1	110334377	110351677
RBM15_chr1_110334377_110351677	0/0	c0012	2934	1	0	0	1	0	0	copy fasta	RBM15	chr1	110334377	110351677
RBM15_chr1_110334377_110351677	0/0	c0013	2934	1	0	0	0	1	0	copy fasta	RBM15	chr1	110334377	110351677
RBM15_chr1_110334377_110351677	0/0	c0014	2934	1	1	0	0	0	0	copy fasta	RBM15	chr1	110334377	110351677
RBM15_chr1_110334377_110351677	0/0	c0015	2934	1	1	0	0	0	0	copy fasta	RBM15	chr1	110334377	110351677
RBM15_chr1_110334377_110351677	0/0	c0016	2934	1	1	0	0	0	0	copy fasta	RBM15	chr1	110334377	110351677
RBM15_chr1_110334377_110351677	0/0	c0017	2934	1	0	0	1	0	0	copy fasta	RBM15	chr1	110334377	110351677
RBM17_chr10_6084034_6122447	1/1	c0001	1206	405	77	75	193	16	42	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	c0002	1206	15	5	3	7	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	c0003	1206	7	7	0	0	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	c0004	1206	6	5	1	0	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	c0005	1206	1	0	1	0	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM18_chr9_122232622_122269840	1/1	c0001	573	378	85	74	157	18	42	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	c0002	573	1	1	0	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	c0003	573	1	0	0	1	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM19_chr12_113817057_113971325	0/0	c0001	2883	163	32	35	69	7	20	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0002	2883	37	2	4	25	1	5	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/1	c0003	2883	26	4	5	9	3	4	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0004	2883	24	0	7	15	0	2	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0005	2883	21	5	5	8	3	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0006	2883	10	1	1	5	0	3	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0007	2883	10	8	2	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0008	2883	9	9	0	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0009	2883	7	7	0	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0010	2883	7	3	1	1	1	1	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0011	2883	5	5	0	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0012	2883	4	0	2	0	1	1	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0013	2883	4	3	1	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0014	2883	3	0	2	0	0	1	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0015	2883	3	0	0	1	0	2	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0016	2886	2	0	2	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	1/0	c0017	2883	2	1	0	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0018	2883	1	0	0	1	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0019	2883	1	0	1	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0020	2883	1	1	0	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0021	2883	1	0	0	0	0	1	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0022	2886	1	0	1	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0023	2883	1	0	0	1	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0024	2883	1	0	0	1	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0025	2883	1	0	0	1	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0026	2883	1	0	0	1	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0027	2883	1	0	1	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0028	2883	1	0	0	1	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0029	2883	1	1	0	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0030	2883	1	0	0	0	0	1	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0031	2883	1	0	0	0	0	1	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0032	2883	1	1	0	0	0	0	copy fasta	RBM19	chr12	113817057	113971325