JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RBM19_chr12_113817057_113971325	0/0	c0033	2883	1	1	0	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0034	2883	1	1	0	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0035	2883	1	1	0	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	c0036	2883	1	0	0	1	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM20_chr10_110639336_110844468	0/1	c0001	3684	148	22	46	45	8	26	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	1/0	c0002	3684	41	15	4	17	3	1	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0003	3684	39	15	4	14	2	4	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0004	3684	13	9	1	3	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0005	3684	3	2	1	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0006	3684	2	1	1	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0007	3684	2	2	0	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0008	3684	2	2	0	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0009	3684	2	0	0	2	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0010	3684	2	0	2	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0011	3684	1	1	0	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0012	3684	1	1	0	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0013	3684	1	0	0	1	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0014	3684	1	0	0	0	0	1	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0015	3684	1	0	0	0	0	1	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0016	3684	1	1	0	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0017	3684	1	0	0	1	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0018	3684	1	1	0	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0019	3684	1	0	0	0	1	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0020	3684	1	0	0	0	0	1	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0021	3684	1	0	0	1	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0022	3684	1	1	0	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0023	3684	1	0	1	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	c0024	3684	1	1	0	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM22_chr5_150685792_150706062	1/1	c0001	1263	363	84	62	157	18	40	copy fasta	RBM22	chr5	150685792	150706062
RBM22_chr5_150685792_150706062	0/0	c0002	1263	4	4	0	0	0	0	copy fasta	RBM22	chr5	150685792	150706062
RBM22_chr5_150685792_150706062	0/0	c0003	1263	2	2	0	0	0	0	copy fasta	RBM22	chr5	150685792	150706062
RBM22_chr5_150685792_150706062	0/0	c0004	1263	1	0	0	1	0	0	copy fasta	RBM22	chr5	150685792	150706062
RBM23_chr14_22888204_22924149	1/0	c0001	1320	136	84	15	24	4	8	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	c0002	1323	105	3	31	56	2	13	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/1	c0003	1323	58	0	14	33	2	8	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	c0004	1320	16	5	9	0	0	2	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	c0005	1323	14	0	3	6	2	3	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	c0006	1320	4	1	0	3	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	c0007	1320	3	0	2	0	0	1	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	c0008	1320	3	1	1	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	c0009	1323	3	0	0	3	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	c0010	1320	3	3	0	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	c0011	1323	3	0	0	3	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	c0012	1323	2	0	2	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	c0013	1323	2	0	0	0	1	1	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	c0014	1323	2	0	1	0	1	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	c0015	1323	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	c0016	1320	1	1	0	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	c0017	1320	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	c0018	1323	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149