JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RBM23_chr14_22888204_22924149	0/0	c0019	1323	1	0	1	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	c0020	1320	1	1	0	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	c0021	1320	1	1	0	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	c0022	1323	1	0	1	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM24_chr6_17276361_17298871	1/1	c0001	711	418	92	75	188	14	47	copy fasta	RBM24	chr6	17276361	17298871
RBM24_chr6_17276361_17298871	0/0	c0002	711	23	0	9	14	0	0	copy fasta	RBM24	chr6	17276361	17298871
RBM24_chr6_17276361_17298871	0/0	c0003	711	1	0	0	0	0	1	copy fasta	RBM24	chr6	17276361	17298871
RBM25_chr14_73053534_73128899	1/1	c0001	2532	343	86	66	143	10	36	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	c0002	2532	43	3	9	29	0	2	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	c0003	2532	1	0	1	0	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	c0004	2532	1	1	0	0	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM26_chr13_79313868_79411255	1/0	c0001	3024	169	32	33	80	8	15	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/1	c0002	3024	140	48	26	35	6	24	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	c0003	3024	8	7	0	0	0	1	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	c0004	3024	5	0	0	5	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	c0005	3024	1	1	0	0	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	c0006	3024	1	1	0	0	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	c0007	3024	1	0	1	0	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	c0008	3024	1	0	0	1	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	c0009	3024	1	1	0	0	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	c0010	3024	1	0	0	1	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM27_chr5_146198605_146294223	1/1	c0001	3183	205	23	40	103	8	29	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	c0002	3183	62	48	8	0	2	4	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	c0003	3183	3	0	0	3	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	c0004	3183	1	0	0	0	0	1	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	c0005	3183	1	1	0	0	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM28_chr7_128292685_128348908	1/1	c0001	2280	318	51	66	158	12	29	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	c0002	2280	21	11	5	0	1	4	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	c0003	2280	11	10	1	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	c0004	2280	10	10	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	c0005	2280	4	0	1	0	2	1	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	c0006	2280	2	2	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	c0007	2280	2	2	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	c0008	2280	2	0	0	2	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	c0009	2280	1	0	1	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	c0010	2280	1	0	1	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	c0011	2280	1	1	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	c0012	2280	1	0	0	1	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	c0013	2280	1	0	1	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	c0014	2280	1	0	0	0	1	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	c0015	2280	1	0	0	1	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	c0016	2280	1	1	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	c0017	2280	1	0	0	1	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	c0018	2280	1	0	0	1	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	c0019	2280	1	1	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	c0020	2280	1	1	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM33_chr7_155639661_155786480	0/1	c0001	3513	127	23	26	54	6	17	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	c0002	3513	90	21	8	53	1	7	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	c0003	3513	31	14	4	9	1	3	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	c0004	3513	20	19	1	0	0	0	copy fasta	RBM33	chr7	155639661	155786480