JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RBM33_chr7_155639661_155786480	1/0	c0005	3513	16	0	10	1	1	3	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	c0006	3513	4	4	0	0	0	0	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	c0007	3513	3	2	1	0	0	0	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	c0008	3513	2	2	0	0	0	0	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	c0009	3513	2	0	0	2	0	0	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	c0010	3513	2	0	0	1	0	1	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	c0011	3513	1	1	0	0	0	0	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	c0012	3513	1	0	0	1	0	0	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	c0013	3501	1	0	0	0	1	0	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	c0014	3513	1	1	0	0	0	0	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	c0015	3513	1	0	0	0	0	1	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	c0016	3513	1	1	0	0	0	0	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	c0017	3513	1	1	0	0	0	0	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	c0018	3513	1	1	0	0	0	0	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	c0019	3513	1	0	0	1	0	0	copy fasta	RBM33	chr7	155639661	155786480
RBM34_chr1_235126183_235166250	1/1	c0001	1293	321	51	62	159	14	33	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	c0002	1293	55	33	13	5	0	4	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	c0003	1293	2	0	0	2	0	0	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	c0004	1293	2	2	0	0	0	0	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	c0005	1293	1	1	0	0	0	0	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	c0006	1293	1	1	0	0	0	0	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	c0007	1293	1	0	0	0	0	1	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	c0008	1293	1	1	0	0	0	0	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	c0009	1293	1	0	0	1	0	0	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	c0010	1293	1	0	1	0	0	0	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	c0011	1293	1	1	0	0	0	0	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	c0012	1293	1	0	0	1	0	0	copy fasta	RBM34	chr1	235126183	235166250
RBM38_chr20_57386396_57414333	1/1	c0001	720	351	59	76	152	18	44	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	c0002	720	27	23	4	0	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	c0003	720	15	12	3	0	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	c0004	720	3	0	1	0	0	2	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	c0005	720	2	2	0	0	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	c0006	720	1	0	0	1	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	c0007	720	1	0	0	1	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM39_chr20_35696347_35747260	1/1	c0001	1593	273	85	46	96	12	32	copy fasta	RBM39	chr20	35696347	35747260
RBM39_chr20_35696347_35747260	0/0	c0002	1593	1	1	0	0	0	0	copy fasta	RBM39	chr20	35696347	35747260
RBM3_chrX_48569484_48586162	1/1	c0001	474	294	80	51	123	10	28	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	c0002	473	1	0	0	1	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM41_chrX_107056885_107123822	1/1	c0001	1314	288	72	49	138	7	20	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	c0002	1314	2	2	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM42_chr19_35624036_35642685	1/1	c0001	1443	424	93	84	187	16	42	copy fasta	RBM42	chr19	35624036	35642685
RBM42_chr19_35624036_35642685	0/0	c0002	1443	3	3	0	0	0	0	copy fasta	RBM42	chr19	35624036	35642685
RBM42_chr19_35624036_35642685	0/0	c0003	1443	1	0	0	1	0	0	copy fasta	RBM42	chr19	35624036	35642685
RBM43_chr2_151242940_151266863	1/1	c0001	1074	401	83	75	196	13	32	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	c0002	1074	11	9	1	0	0	1	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	c0003	1074	4	0	0	4	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	c0004	1074	2	0	1	0	1	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	c0005	1074	1	0	0	0	0	1	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	c0006	1074	1	0	1	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM44_chr2_237793779_237847805	1/1	c0001	3156	241	48	41	105	15	30	copy fasta	RBM44	chr2	237793779	237847805