JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RBM44_chr2_237793779_237847805	0/0	c0002	3156	106	13	14	69	1	9	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	c0003	3156	10	9	1	0	0	0	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	c0004	3156	9	7	2	0	0	0	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	c0005	3156	4	0	0	0	0	4	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	c0006	3156	2	2	0	0	0	0	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	c0007	3156	1	0	0	1	0	0	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	c0008	3156	1	0	0	1	0	0	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	c0009	3156	1	0	1	0	0	0	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	c0010	3156	1	0	1	0	0	0	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	c0011	3156	1	0	0	0	0	1	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	c0012	3156	1	1	0	0	0	0	copy fasta	RBM44	chr2	237793779	237847805
RBM45_chr2_178107437_178134656	1/1	c0001	1425	361	92	64	135	18	50	copy fasta	RBM45	chr2	178107437	178134656
RBM45_chr2_178107437_178134656	0/0	c0002	1425	1	1	0	0	0	0	copy fasta	RBM45	chr2	178107437	178134656
RBM45_chr2_178107437_178134656	0/0	c0003	1425	1	0	0	1	0	0	copy fasta	RBM45	chr2	178107437	178134656
RBM45_chr2_178107437_178134656	0/0	c0004	1425	1	1	0	0	0	0	copy fasta	RBM45	chr2	178107437	178134656
RBM46_chr4_154776272_154833813	0/1	c0001	1602	212	55	33	91	6	26	copy fasta	RBM46	chr4	154776272	154833813
RBM46_chr4_154776272_154833813	1/0	c0002	1602	86	7	18	42	6	12	copy fasta	RBM46	chr4	154776272	154833813
RBM46_chr4_154776272_154833813	0/0	c0003	1602	35	27	2	6	0	0	copy fasta	RBM46	chr4	154776272	154833813
RBM46_chr4_154776272_154833813	0/0	c0004	1602	33	1	3	29	0	0	copy fasta	RBM46	chr4	154776272	154833813
RBM46_chr4_154776272_154833813	0/0	c0005	1602	4	4	0	0	0	0	copy fasta	RBM46	chr4	154776272	154833813
RBM46_chr4_154776272_154833813	0/0	c0006	1602	3	0	0	3	0	0	copy fasta	RBM46	chr4	154776272	154833813
RBM46_chr4_154776272_154833813	0/0	c0007	1602	1	0	0	1	0	0	copy fasta	RBM46	chr4	154776272	154833813
RBM47_chr4_40418280_40634864	0/0	c0001	1782	97	15	27	39	5	11	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/1	c0002	1782	52	5	6	30	1	9	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0003	1782	37	12	7	15	1	2	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0004	1782	25	21	3	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	1/0	c0005	1782	17	6	1	8	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0006	1782	11	10	1	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0007	1782	10	5	1	4	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0008	1782	4	0	1	2	1	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0009	1782	3	3	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0010	1782	3	2	1	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0011	1782	2	2	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0012	1782	2	1	1	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0013	1782	2	0	0	2	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0014	1782	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0015	1782	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0016	1782	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0017	1782	1	0	0	0	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0018	1782	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0019	1782	1	0	0	0	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0020	1761	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0021	1782	1	0	1	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0022	1770	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0023	1782	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0024	1782	1	0	0	0	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0025	1782	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	c0026	1782	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM48_chr7_92523795_92545481	1/1	c0001	1104	356	75	48	176	14	41	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	c0002	1104	23	0	5	18	0	0	copy fasta	RBM48	chr7	92523795	92545481