JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RBM48_chr7_92523795_92545481	0/0	c0003	1104	4	4	0	0	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	c0004	1104	3	0	0	0	0	3	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	c0005	1104	3	0	0	3	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	c0006	1104	2	0	2	0	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	c0007	1104	1	1	0	0	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	c0008	1104	1	0	0	0	0	1	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	c0009	1104	1	0	0	1	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	c0010	1104	1	0	0	0	0	1	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	c0011	1104	1	0	1	0	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM4B_chr11_66659998_66682887	1/1	c0001	1080	396	95	55	190	18	36	copy fasta	RBM4B	chr11	66659998	66682887
RBM4B_chr11_66659998_66682887	0/0	c0002	1080	1	1	0	0	0	0	copy fasta	RBM4B	chr11	66659998	66682887
RBM4B_chr11_66659998_66682887	0/0	c0003	1080	1	0	1	0	0	0	copy fasta	RBM4B	chr11	66659998	66682887
RBM4_chr11_66633703_66651468	1/1	c0001	1095	399	91	65	192	14	35	copy fasta	RBM4	chr11	66633703	66651468
RBM4_chr11_66633703_66651468	0/0	c0002	1095	2	1	1	0	0	0	copy fasta	RBM4	chr11	66633703	66651468
RBM4_chr11_66633703_66651468	0/0	c0003	1095	1	1	0	0	0	0	copy fasta	RBM4	chr11	66633703	66651468
RBM4_chr11_66633703_66651468	0/0	c0004	1095	1	0	1	0	0	0	copy fasta	RBM4	chr11	66633703	66651468
RBM4_chr11_66633703_66651468	0/0	c0005	1095	1	0	0	0	0	1	copy fasta	RBM4	chr11	66633703	66651468
RBM4_chr11_66633703_66651468	0/0	c0006	1095	1	0	1	0	0	0	copy fasta	RBM4	chr11	66633703	66651468
RBM4_chr11_66633703_66651468	0/0	c0007	1095	1	1	0	0	0	0	copy fasta	RBM4	chr11	66633703	66651468
RBM5_chr3_50083919_50124021	0/0	c0001	2448	184	66	27	60	13	18	copy fasta	RBM5	chr3	50083919	50124021
RBM5_chr3_50083919_50124021	1/1	c0002	2448	87	13	27	33	5	7	copy fasta	RBM5	chr3	50083919	50124021
RBM5_chr3_50083919_50124021	0/0	c0003	2448	6	6	0	0	0	0	copy fasta	RBM5	chr3	50083919	50124021
RBM5_chr3_50083919_50124021	0/0	c0004	2448	5	0	0	5	0	0	copy fasta	RBM5	chr3	50083919	50124021
RBM5_chr3_50083919_50124021	0/0	c0005	2448	1	1	0	0	0	0	copy fasta	RBM5	chr3	50083919	50124021
RBM5_chr3_50083919_50124021	0/0	c0006	2448	1	0	0	0	0	1	copy fasta	RBM5	chr3	50083919	50124021
RBM6_chr3_49935150_50082249	0/0	c0001	3372	116	59	18	26	5	8	copy fasta	RBM6	chr3	49935150	50082249
RBM6_chr3_49935150_50082249	1/1	c0002	3372	66	15	19	20	5	5	copy fasta	RBM6	chr3	49935150	50082249
RBM6_chr3_49935150_50082249	0/0	c0003	3372	15	4	7	0	1	3	copy fasta	RBM6	chr3	49935150	50082249
RBM6_chr3_49935150_50082249	0/0	c0004	3372	6	6	0	0	0	0	copy fasta	RBM6	chr3	49935150	50082249
RBM6_chr3_49935150_50082249	0/0	c0005	3372	4	4	0	0	0	0	copy fasta	RBM6	chr3	49935150	50082249
RBM6_chr3_49935150_50082249	0/0	c0006	3372	3	0	0	3	0	0	copy fasta	RBM6	chr3	49935150	50082249
RBM6_chr3_49935150_50082249	0/0	c0007	3372	3	0	3	0	0	0	copy fasta	RBM6	chr3	49935150	50082249
RBM6_chr3_49935150_50082249	0/0	c0008	3372	2	0	1	0	1	0	copy fasta	RBM6	chr3	49935150	50082249
RBM6_chr3_49935150_50082249	0/0	c0009	3372	1	1	0	0	0	0	copy fasta	RBM6	chr3	49935150	50082249
RBM6_chr3_49935150_50082249	0/0	c0010	3372	1	0	0	1	0	0	copy fasta	RBM6	chr3	49935150	50082249
RBM6_chr3_49935150_50082249	0/0	c0011	3372	1	1	0	0	0	0	copy fasta	RBM6	chr3	49935150	50082249
RBM7_chr11_114395666_114415607	1/1	c0001	804	403	89	74	182	12	44	copy fasta	RBM7	chr11	114395666	114415607
RBM7_chr11_114395666_114415607	0/0	c0002	804	3	3	0	0	0	0	copy fasta	RBM7	chr11	114395666	114415607
RBM7_chr11_114395666_114415607	0/0	c0003	804	2	2	0	0	0	0	copy fasta	RBM7	chr11	114395666	114415607
RBM7_chr11_114395666_114415607	0/0	c0004	804	2	0	0	2	0	0	copy fasta	RBM7	chr11	114395666	114415607
RBM8A_chr1_145916556_145932484	1/1	c0001	525	382	90	76	164	8	42	copy fasta	RBM8A	chr1	145916556	145932484
RBMS1_chr2_160267151_160498807	1/1	c0001	1221	237	70	47	80	13	25	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	c0002	1221	90	10	22	46	3	9	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	c0003	1221	1	0	1	0	0	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS2_chr12_56516820_56601193	0/0	c0001	1224	167	34	36	69	7	21	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	1/1	c0002	1224	105	49	16	24	5	9	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	c0003	1224	4	4	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	c0004	1224	3	1	2	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	c0005	1224	1	0	0	1	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS3_chr3_29276071_30015386	1/0	c0001	1314	94	47	18	12	8	8	copy fasta	RBMS3	chr3	29276071	30015386