JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RBMS3_chr3_29276071_30015386	0/1	c0002	1314	18	3	2	8	0	4	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	c0003	1314	2	0	0	0	2	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	c0004	1314	1	1	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	c0005	1314	1	1	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMX2_chrX_130396987_130418656	1/1	c0001	969	298	67	59	133	11	26	copy fasta	RBMX2	chrX	130396987	130418656
RBMX2_chrX_130396987_130418656	0/0	c0002	969	2	2	0	0	0	0	copy fasta	RBMX2	chrX	130396987	130418656
RBMX2_chrX_130396987_130418656	0/0	c0003	969	2	2	0	0	0	0	copy fasta	RBMX2	chrX	130396987	130418656
RBMX2_chrX_130396987_130418656	0/0	c0004	969	1	1	0	0	0	0	copy fasta	RBMX2	chrX	130396987	130418656
RBMX2_chrX_130396987_130418656	0/0	c0005	969	1	0	0	1	0	0	copy fasta	RBMX2	chrX	130396987	130418656
RBMX2_chrX_130396987_130418656	0/0	c0006	968	1	0	0	1	0	0	copy fasta	RBMX2	chrX	130396987	130418656
RBMXL1_chr1_88974456_88997629	1/1	c0001	1173	390	70	78	185	15	40	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	c0002	1173	27	25	2	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	c0003	1173	2	2	0	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	c0004	1173	1	0	0	1	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	c0005	1173	1	1	0	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	c0006	1173	1	0	0	0	0	1	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	c0007	1173	1	0	0	0	0	1	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	c0008	1173	1	0	0	1	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	c0009	1173	1	0	0	0	1	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	c0010	1173	1	0	0	1	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL2_chr11_7083998_7096148	0/0	c0001	1179	220	46	40	107	8	19	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/1	c0002	1179	124	11	14	82	4	12	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	c0003	1179	52	23	16	4	4	5	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	c0004	1180	24	6	5	10	0	3	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	c0005	1180	10	1	1	5	0	3	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	1/0	c0006	1179	8	5	2	0	0	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	c0007	1179	6	0	0	6	0	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	c0008	1180	4	2	0	0	0	2	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	c0009	1179	2	2	0	0	0	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	c0010	1179	1	0	0	0	0	1	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	c0011	1180	1	0	0	0	0	1	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	c0012	1179	1	0	0	1	0	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	c0013	1179	1	0	0	1	0	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	c0014	1179	1	0	0	1	0	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	c0015	1180	1	1	0	0	0	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	c0016	1180	1	0	0	1	0	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	c0017	1180	1	0	0	1	0	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	c0018	1179	1	0	0	1	0	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	c0019	1179	1	1	0	0	0	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL3_chrX_115184410_115197868	0/1	c0001	3231	100	8	13	65	4	9	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0002	3231	35	2	9	23	0	1	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0003	3231	27	9	7	8	1	2	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0004	3231	14	0	8	6	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	1/0	c0005	3204	12	6	1	3	0	1	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0006	3231	11	3	0	6	1	1	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0007	3231	8	0	1	1	0	6	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0008	3231	8	8	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0009	3231	7	6	1	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0010	3231	4	4	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0011	3204	4	2	2	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868