JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RBMXL3_chrX_115184410_115197868	0/0	c0012	3231	3	3	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0013	3231	3	0	0	3	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0014	3231	3	0	2	0	1	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0015	3231	3	0	0	3	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0016	3232	2	1	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0017	3232	2	0	0	0	1	1	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0018	3231	2	2	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0019	3231	2	2	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0020	3231	2	2	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0021	3231	2	2	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0022	3231	2	0	0	2	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0023	3231	2	0	0	2	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0024	3231	2	0	0	2	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0025	3231	2	1	1	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0026	3204	2	2	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0027	3231	2	0	0	1	0	1	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0028	3231	2	2	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0029	3231	1	0	1	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0030	3231	1	0	1	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0031	3231	1	0	0	0	0	1	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0032	3232	1	0	1	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0033	3232	1	0	0	0	0	1	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0034	3232	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0035	3231	1	0	1	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0036	3231	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0037	3231	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0038	3231	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0039	3231	1	0	0	0	1	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0040	3231	1	0	1	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0041	3231	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0042	3231	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0043	3231	1	0	0	0	0	1	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0044	3231	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0045	3231	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0046	3231	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0047	3232	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0048	3231	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0049	3231	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0050	3231	1	0	0	0	0	1	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0051	3231	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0052	3204	1	0	0	0	0	1	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0053	3231	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0054	3231	1	0	1	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0055	3231	1	0	1	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0056	3231	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0057	3231	1	0	1	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0058	3232	1	0	0	0	0	1	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0059	3231	1	0	1	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0060	3348	1	0	0	0	0	1	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0061	3231	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868