JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ASIC4_chr2_219509482_219543772	0/0	c0031	1620	1	0	0	1	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0032	1620	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0033	1620	1	0	0	0	0	1	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0034	1620	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0035	1620	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0036	1620	1	0	1	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	c0037	1620	1	0	1	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC5_chr4_155824729_155871277	0/1	c0001	1518	255	42	62	109	11	30	copy fasta	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	1/0	c0002	1518	48	30	3	8	2	4	copy fasta	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	c0003	1518	20	13	1	3	0	3	copy fasta	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	c0004	1518	6	5	1	0	0	0	copy fasta	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	c0005	1518	1	0	1	0	0	0	copy fasta	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	c0006	1518	1	0	0	0	0	1	copy fasta	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	c0007	1518	1	0	0	0	1	0	copy fasta	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	c0008	1518	1	1	0	0	0	0	copy fasta	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	c0009	1518	1	1	0	0	0	0	copy fasta	ASIC5	chr4	155824729	155871277
ASIP_chr20_34236423_34274344	1/1	c0001	399	300	73	45	139	9	32	copy fasta	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	c0002	399	3	0	0	3	0	0	copy fasta	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	c0003	399	1	0	0	0	1	0	copy fasta	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	c0004	399	1	0	1	0	0	0	copy fasta	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	c0005	399	1	1	0	0	0	0	copy fasta	ASIP	chr20	34236423	34274344
ASL_chr7_66070819_66098576	1/1	c0001	1395	283	82	53	102	16	28	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	c0002	1395	13	0	1	12	0	0	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	c0003	1395	4	4	0	0	0	0	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	c0004	1395	3	0	0	3	0	0	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	c0005	1395	2	0	0	2	0	0	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	c0006	1395	2	2	0	0	0	0	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	c0007	1395	1	0	0	1	0	0	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	c0008	1395	1	1	0	0	0	0	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	c0009	1395	1	1	0	0	0	0	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	c0010	1395	1	0	0	0	0	1	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	c0011	1395	1	0	0	1	0	0	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	c0012	1395	1	0	0	1	0	0	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	c0013	1395	1	0	0	0	0	1	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	c0014	1395	1	0	0	1	0	0	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	c0015	1395	1	0	0	1	0	0	copy fasta	ASL	chr7	66070819	66098576
ASMTL_chrX_1398139_1457909	0/0	c0001	1866	39	0	10	24	1	4	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0002	1866	28	11	5	10	0	2	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0003	1866	15	11	1	2	0	1	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/1	c0004	1866	12	2	4	4	1	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0005	1866	10	1	4	3	2	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0006	1866	9	1	2	5	0	1	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0007	1865	8	0	5	2	1	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0008	1866	8	0	1	7	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	1/0	c0009	1866	6	3	0	2	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0010	1866	4	0	0	3	0	1	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0011	1866	3	3	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0012	1866	3	1	0	2	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0013	1866	2	2	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0014	1866	2	1	0	1	0	0	copy fasta	ASMTL	chrX	1398139	1457909