JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RBP3_chr10_47343363_47362881	0/0	c0032	3744	1	0	1	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0033	3744	1	1	0	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0034	3744	1	1	0	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0035	3744	1	0	0	0	1	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0036	3744	1	1	0	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0037	3744	1	0	0	0	0	1	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0038	3744	1	1	0	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0039	3744	1	0	1	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0040	3744	1	0	1	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0041	3744	1	0	0	0	1	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0042	3744	1	1	0	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP4_chr10_93586694_93606235	1/1	c0001	606	410	88	77	178	17	48	copy fasta	RBP4	chr10	93586694	93606235
RBP4_chr10_93586694_93606235	0/0	c0002	606	13	12	1	0	0	0	copy fasta	RBP4	chr10	93586694	93606235
RBP4_chr10_93586694_93606235	0/0	c0003	606	1	0	0	0	1	0	copy fasta	RBP4	chr10	93586694	93606235
RBP5_chr12_7118686_7133889	1/1	c0001	408	158	36	28	71	7	14	copy fasta	RBP5	chr12	7118686	7133889
RBP5_chr12_7118686_7133889	0/0	c0002	408	108	19	29	34	3	23	copy fasta	RBP5	chr12	7118686	7133889
RBP5_chr12_7118686_7133889	0/0	c0003	408	89	16	10	56	4	3	copy fasta	RBP5	chr12	7118686	7133889
RBP5_chr12_7118686_7133889	0/0	c0004	408	45	4	5	24	2	10	copy fasta	RBP5	chr12	7118686	7133889
RBP5_chr12_7118686_7133889	0/0	c0005	408	11	11	0	0	0	0	copy fasta	RBP5	chr12	7118686	7133889
RBP5_chr12_7118686_7133889	0/0	c0006	408	10	0	0	10	0	0	copy fasta	RBP5	chr12	7118686	7133889
RBP5_chr12_7118686_7133889	0/0	c0007	408	2	2	0	0	0	0	copy fasta	RBP5	chr12	7118686	7133889
RBP5_chr12_7118686_7133889	0/0	c0008	408	1	0	0	1	0	0	copy fasta	RBP5	chr12	7118686	7133889
RBP7_chr1_9992228_10021021	1/1	c0001	405	372	94	62	154	16	44	copy fasta	RBP7	chr1	9992228	10021021
RBP7_chr1_9992228_10021021	0/0	c0002	405	2	0	0	2	0	0	copy fasta	RBP7	chr1	9992228	10021021
RBP7_chr1_9992228_10021021	0/0	c0003	405	2	0	2	0	0	0	copy fasta	RBP7	chr1	9992228	10021021
RBPJL_chr20_45301840_45322824	1/1	c0001	1554	326	75	62	142	15	30	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	c0002	1554	67	0	7	52	0	8	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	c0003	1554	25	6	9	4	2	4	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	c0004	1542	6	6	0	0	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	c0005	1554	4	0	0	4	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	c0006	1554	3	3	0	0	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	c0007	1554	2	2	0	0	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	c0008	1554	2	1	0	0	1	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	c0009	1554	2	2	0	0	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	c0010	1554	1	1	0	0	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	c0011	1554	1	0	1	0	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	c0012	1554	1	0	0	0	0	1	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	c0013	1554	1	1	0	0	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	c0014	1554	1	0	0	1	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	c0015	1554	1	1	0	0	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	c0016	1554	1	0	1	0	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	c0017	1554	1	0	0	0	0	1	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	c0018	1554	1	0	0	1	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJ_chr4_26316014_26439923	1/0	c0001	1464	191	60	24	77	9	20	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/1	c0002	1464	116	17	19	57	5	17	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	c0003	1464	7	4	3	0	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	c0004	1464	1	1	0	0	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	c0005	1464	1	0	0	0	0	1	copy fasta	RBPJ	chr4	26316014	26439923
RBPMS2_chr15_64734891_64780589	1/1	c0001	630	241	93	46	49	16	35	copy fasta	RBPMS2	chr15	64734891	64780589
RBPMS2_chr15_64734891_64780589	0/0	c0002	630	10	0	0	1	0	9	copy fasta	RBPMS2	chr15	64734891	64780589