JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RBPMS2_chr15_64734891_64780589	0/0	c0003	630	1	1	0	0	0	0	copy fasta	RBPMS2	chr15	64734891	64780589
RBPMS_chr8_30379541_30577256	1/1	c0001	591	293	66	56	123	10	36	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	c0002	591	10	10	0	0	0	0	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	c0003	591	1	0	0	1	0	0	copy fasta	RBPMS	chr8	30379541	30577256
RBSN_chr3_15065073_15104148	1/1	c0001	2355	306	68	61	128	14	33	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	c0002	2355	29	2	9	15	0	3	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	c0003	2355	8	8	0	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	c0004	2355	7	7	0	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	c0005	2355	5	5	0	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	c0006	2355	2	2	0	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	c0007	2355	1	1	0	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	c0008	2355	1	1	0	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	c0009	2355	1	0	0	1	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBX1_chr22_40946378_40978309	1/1	c0001	327	320	94	52	112	16	44	copy fasta	RBX1	chr22	40946378	40978309
RC3H1_chr1_173926084_174027357	1/1	c0001	3402	258	52	37	134	6	27	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	c0002	3402	19	18	1	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	c0003	3402	11	4	3	0	3	1	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	c0004	3402	3	3	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	c0005	3402	3	2	1	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	c0006	3402	2	0	0	2	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	c0007	3402	2	2	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	c0008	3402	2	2	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	c0009	3402	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	c0010	3402	1	0	0	1	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	c0011	3402	1	0	0	1	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	c0012	3402	1	0	0	0	1	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	c0013	3402	1	0	0	0	0	1	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	c0014	3402	1	0	0	1	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	c0015	3402	1	0	0	0	0	1	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	c0016	3402	1	0	0	1	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	c0017	3402	1	0	0	1	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	c0018	3402	1	0	0	1	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H2_chr9_122839556_122910359	1/1	c0001	3576	186	49	39	52	14	30	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	c0002	3576	101	22	21	54	1	3	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	c0003	3576	10	1	0	9	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	c0004	3576	8	7	1	0	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	c0005	3576	7	3	3	0	1	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	c0006	3576	2	1	1	0	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	c0007	3576	1	1	0	0	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	c0008	3576	1	0	0	0	0	1	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	c0009	3576	1	0	0	1	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	c0010	3576	1	0	0	1	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	c0011	3576	1	0	1	0	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	c0012	3576	1	0	0	1	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RCAN1_chr21_34511442_34620113	1/1	c0001	759	302	90	53	104	12	41	copy fasta	RCAN1	chr21	34511442	34620113
RCAN1_chr21_34511442_34620113	0/0	c0002	759	64	1	14	46	0	3	copy fasta	RCAN1	chr21	34511442	34620113
RCAN1_chr21_34511442_34620113	0/0	c0003	759	4	0	0	4	0	0	copy fasta	RCAN1	chr21	34511442	34620113
RCAN1_chr21_34511442_34620113	0/0	c0004	759	3	0	0	3	0	0	copy fasta	RCAN1	chr21	34511442	34620113
RCAN1_chr21_34511442_34620113	0/0	c0005	759	1	0	0	1	0	0	copy fasta	RCAN1	chr21	34511442	34620113
RCAN1_chr21_34511442_34620113	0/0	c0006	759	1	0	0	1	0	0	copy fasta	RCAN1	chr21	34511442	34620113