JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RCAN1_chr21_34511442_34620113	0/0	c0007	759	1	0	1	0	0	0	copy fasta	RCAN1	chr21	34511442	34620113
RCAN1_chr21_34511442_34620113	0/0	c0008	759	1	0	0	1	0	0	copy fasta	RCAN1	chr21	34511442	34620113
RCAN1_chr21_34511442_34620113	0/0	c0009	759	1	1	0	0	0	0	copy fasta	RCAN1	chr21	34511442	34620113
RCAN2_chr6_46215736_46496449	0/0	c0001	732	156	56	31	49	8	12	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	c0002	732	1	0	1	0	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	c0003	732	1	0	0	1	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN3_chr1_24497836_24546040	1/1	c0001	726	143	43	33	44	7	14	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	c0002	726	138	21	24	74	4	15	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	c0003	726	36	18	4	6	3	5	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	c0004	726	5	4	1	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	c0005	726	3	0	0	3	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	c0006	726	3	3	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	c0007	726	1	0	0	1	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	c0008	726	1	1	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	c0009	726	1	0	0	0	0	1	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	c0010	726	1	0	0	0	0	1	copy fasta	RCAN3	chr1	24497836	24546040
RCBTB1_chr13_49526946_49590558	0/1	c0001	1596	184	26	40	87	10	20	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	c0002	1596	96	22	7	54	1	12	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	1/0	c0003	1596	57	6	10	34	4	2	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	c0004	1596	30	5	7	17	0	1	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	c0005	1596	11	9	2	0	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	c0006	1596	10	10	0	0	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	c0007	1596	9	9	0	0	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	c0008	1596	5	5	0	0	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	c0009	1596	3	0	0	3	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	c0010	1596	2	0	0	0	0	2	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	c0011	1596	2	1	1	0	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	c0012	1596	1	0	0	1	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	c0013	1596	1	0	0	0	0	1	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	c0014	1596	1	0	0	0	1	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	c0015	1596	1	0	1	0	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	c0016	1596	1	1	0	0	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	c0017	1596	1	1	0	0	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	c0018	1596	1	0	0	0	0	1	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	c0019	1596	1	1	0	0	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	c0020	1596	1	0	0	0	0	1	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB2_chr13_48483963_48538080	1/1	c0001	1656	265	70	50	110	6	27	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	c0002	1656	26	0	0	22	1	3	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	c0003	1656	8	6	2	0	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	c0004	1656	5	5	0	0	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	c0005	1656	4	4	0	0	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	c0006	1656	4	3	1	0	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	c0007	1656	3	2	0	1	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	c0008	1656	2	2	0	0	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	c0009	1656	1	0	0	1	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	c0010	1656	1	0	0	0	1	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	c0011	1656	1	0	1	0	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCC1L_chr7_75037183_75078802	1/0	c0001	1395	152	68	32	22	8	21	copy fasta	RCC1L	chr7	75037183	75078802
RCC1L_chr7_75037183_75078802	0/1	c0002	1395	107	9	26	44	8	19	copy fasta	RCC1L	chr7	75037183	75078802
RCC1L_chr7_75037183_75078802	0/0	c0003	1395	3	3	0	0	0	0	copy fasta	RCC1L	chr7	75037183	75078802