JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RCC1L_chr7_75037183_75078802	0/0	c0004	1395	2	1	1	0	0	0	copy fasta	RCC1L	chr7	75037183	75078802
RCC1L_chr7_75037183_75078802	0/0	c0005	1395	2	2	0	0	0	0	copy fasta	RCC1L	chr7	75037183	75078802
RCC1L_chr7_75037183_75078802	0/0	c0006	1395	1	0	1	0	0	0	copy fasta	RCC1L	chr7	75037183	75078802
RCC1L_chr7_75037183_75078802	0/0	c0007	1395	1	0	0	0	0	1	copy fasta	RCC1L	chr7	75037183	75078802
RCC1L_chr7_75037183_75078802	0/0	c0008	1395	1	1	0	0	0	0	copy fasta	RCC1L	chr7	75037183	75078802
RCC1L_chr7_75037183_75078802	0/0	c0009	1395	1	0	0	0	0	1	copy fasta	RCC1L	chr7	75037183	75078802
RCC1_chr1_28501043_28543989	1/1	c0001	1266	176	40	39	66	8	21	copy fasta	RCC1	chr1	28501043	28543989
RCC1_chr1_28501043_28543989	0/0	c0002	1266	85	25	23	17	8	12	copy fasta	RCC1	chr1	28501043	28543989
RCC1_chr1_28501043_28543989	0/0	c0003	1266	26	19	4	0	2	1	copy fasta	RCC1	chr1	28501043	28543989
RCC1_chr1_28501043_28543989	0/0	c0004	1266	5	3	2	0	0	0	copy fasta	RCC1	chr1	28501043	28543989
RCC1_chr1_28501043_28543989	0/0	c0005	1266	1	1	0	0	0	0	copy fasta	RCC1	chr1	28501043	28543989
RCC1_chr1_28501043_28543989	0/0	c0006	1266	1	0	0	1	0	0	copy fasta	RCC1	chr1	28501043	28543989
RCC2_chr1_17401760_17444677	1/1	c0001	1569	261	52	40	131	8	28	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	c0002	1569	108	31	32	25	4	16	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	c0003	1569	10	7	3	0	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	c0004	1569	3	3	0	0	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	c0005	1569	1	1	0	0	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	c0006	1569	1	0	0	0	0	1	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	c0007	1569	1	0	0	0	0	1	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	c0008	1569	1	0	0	1	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	c0009	1569	1	0	0	1	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	c0010	1569	1	0	0	1	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	c0011	1569	1	0	0	1	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	c0012	1569	1	0	1	0	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCCD1_chr15_90949884_90968125	1/1	c0001	1131	274	69	56	100	14	33	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	c0002	1131	106	6	20	67	0	13	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	c0003	1131	22	20	2	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	c0004	1131	12	0	0	12	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	c0005	1131	11	0	0	11	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	c0006	1131	2	2	0	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	c0007	1131	1	1	0	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	c0008	1131	1	1	0	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	c0009	1131	1	0	0	0	1	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	c0010	1131	1	1	0	0	0	0	copy fasta	RCCD1	chr15	90949884	90968125
RCCD1_chr15_90949884_90968125	0/0	c0011	1131	1	0	0	0	1	0	copy fasta	RCCD1	chr15	90949884	90968125
RCE1_chr11_66838441_66851552	1/1	c0001	990	386	70	70	184	14	46	copy fasta	RCE1	chr11	66838441	66851552
RCE1_chr11_66838441_66851552	0/0	c0002	990	17	15	2	0	0	0	copy fasta	RCE1	chr11	66838441	66851552
RCE1_chr11_66838441_66851552	0/0	c0003	990	4	4	0	0	0	0	copy fasta	RCE1	chr11	66838441	66851552
RCE1_chr11_66838441_66851552	0/0	c0004	990	3	0	0	3	0	0	copy fasta	RCE1	chr11	66838441	66851552
RCE1_chr11_66838441_66851552	0/0	c0005	990	1	1	0	0	0	0	copy fasta	RCE1	chr11	66838441	66851552
RCE1_chr11_66838441_66851552	0/0	c0006	990	1	0	0	1	0	0	copy fasta	RCE1	chr11	66838441	66851552
RCHY1_chr4_75474033_75519403	1/1	c0001	786	405	88	67	196	14	38	copy fasta	RCHY1	chr4	75474033	75519403
RCHY1_chr4_75474033_75519403	0/0	c0002	786	1	0	1	0	0	0	copy fasta	RCHY1	chr4	75474033	75519403
RCL1_chr9_4787944_4866066	1/1	c0001	1122	370	87	64	157	16	44	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	c0002	1122	3	3	0	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	c0003	1122	3	0	0	3	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	c0004	1122	2	1	1	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	c0005	1122	2	1	1	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	c0006	1122	1	1	0	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	c0007	1122	1	0	1	0	0	0	copy fasta	RCL1	chr9	4787944	4866066