JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RCL1_chr9_4787944_4866066	0/0	c0008	1122	1	1	0	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	c0009	1122	1	0	1	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	c0010	1122	1	1	0	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCL1_chr9_4787944_4866066	0/0	c0011	1122	1	1	0	0	0	0	copy fasta	RCL1	chr9	4787944	4866066
RCN1_chr11_32086074_32110722	0/1	c0001	996	204	20	30	123	7	23	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	1/0	c0002	996	182	60	41	55	9	16	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	0/0	c0003	996	12	12	0	0	0	0	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	0/0	c0004	996	2	0	0	2	0	0	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	0/0	c0005	996	1	0	1	0	0	0	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	0/0	c0006	996	1	0	0	0	0	1	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	0/0	c0007	996	1	1	0	0	0	0	copy fasta	RCN1	chr11	32086074	32110722
RCN1_chr11_32086074_32110722	0/0	c0008	996	1	1	0	0	0	0	copy fasta	RCN1	chr11	32086074	32110722
RCN2_chr15_76926749_76959393	1/1	c0001	954	404	95	66	195	11	35	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	c0002	954	12	0	4	0	5	3	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	c0003	954	1	0	0	0	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	c0004	954	1	1	0	0	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	c0005	954	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	c0006	954	1	0	0	0	0	1	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	c0007	954	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN2_chr15_76926749_76959393	0/0	c0008	954	1	0	0	1	0	0	copy fasta	RCN2	chr15	76926749	76959393
RCN3_chr19_49523003_49548633	1/1	c0001	987	328	67	64	141	15	39	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	c0002	987	18	6	1	9	0	2	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	c0003	987	8	7	1	0	0	0	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	c0004	987	6	3	3	0	0	0	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	c0005	987	4	0	1	0	1	2	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	c0006	987	3	1	2	0	0	0	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	c0007	987	3	3	0	0	0	0	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	c0008	987	3	3	0	0	0	0	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	c0009	987	2	2	0	0	0	0	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	c0010	987	1	0	0	0	0	1	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	c0011	987	1	1	0	0	0	0	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	c0012	987	1	0	1	0	0	0	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	c0013	987	1	0	1	0	0	0	copy fasta	RCN3	chr19	49523003	49548633
RCN3_chr19_49523003_49548633	0/0	c0014	987	1	1	0	0	0	0	copy fasta	RCN3	chr19	49523003	49548633
RCOR1_chr14_102587649_102735561	1/1	c0001	1458	284	85	64	93	14	26	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	c0002	1458	3	1	2	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	c0003	1458	1	1	0	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	c0004	1458	1	1	0	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	c0005	1458	1	0	1	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	c0006	1458	1	0	1	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	c0007	1458	1	0	0	1	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR2_chr11_63906230_63922164	0/1	c0001	1572	297	72	61	104	16	43	copy fasta	RCOR2	chr11	63906230	63922164
RCOR2_chr11_63906230_63922164	1/0	c0002	1572	9	6	2	0	0	0	copy fasta	RCOR2	chr11	63906230	63922164
RCOR2_chr11_63906230_63922164	0/0	c0003	1572	9	9	0	0	0	0	copy fasta	RCOR2	chr11	63906230	63922164
RCOR2_chr11_63906230_63922164	0/0	c0004	1572	4	4	0	0	0	0	copy fasta	RCOR2	chr11	63906230	63922164
RCOR2_chr11_63906230_63922164	0/0	c0005	1572	1	0	0	1	0	0	copy fasta	RCOR2	chr11	63906230	63922164
RCOR2_chr11_63906230_63922164	0/0	c0006	1572	1	0	0	0	0	1	copy fasta	RCOR2	chr11	63906230	63922164
RCOR2_chr11_63906230_63922164	0/0	c0007	1572	1	0	1	0	0	0	copy fasta	RCOR2	chr11	63906230	63922164
RCOR2_chr11_63906230_63922164	0/0	c0008	1572	1	0	0	1	0	0	copy fasta	RCOR2	chr11	63906230	63922164
RCOR2_chr11_63906230_63922164	0/0	c0009	1572	1	1	0	0	0	0	copy fasta	RCOR2	chr11	63906230	63922164