JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RDH12_chr14_67696886_67739451	0/0	c0006	951	1	1	0	0	0	0	copy fasta	RDH12	chr14	67696886	67739451
RDH13_chr19_55039316_55068148	0/1	c0001	996	121	24	34	44	6	12	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0002	996	113	15	14	66	4	14	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0003	996	55	1	8	38	0	8	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0004	996	34	17	8	3	3	3	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0005	996	24	1	5	9	4	5	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0006	996	3	3	0	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0007	996	3	0	0	3	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0008	996	2	0	0	2	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0009	996	2	1	1	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0010	996	2	0	0	2	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0011	996	2	1	1	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0012	996	1	0	0	1	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0013	996	1	0	0	1	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0014	996	1	1	0	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0015	996	1	0	0	1	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0016	996	1	1	0	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0017	996	1	0	0	0	0	1	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0018	996	1	0	0	0	0	1	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0019	996	1	0	0	0	0	1	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0020	996	1	0	0	1	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0021	996	1	0	1	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0022	996	1	0	0	0	1	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0023	996	1	0	0	0	0	1	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0024	996	1	0	0	1	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0025	996	1	1	0	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0026	996	1	0	0	1	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	c0027	996	1	0	0	1	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH14_chr2_18549723_18565653	1/1	c0001	1011	415	87	77	203	16	30	copy fasta	RDH14	chr2	18549723	18565653
RDH14_chr2_18549723_18565653	0/0	c0002	1011	19	0	1	11	0	7	copy fasta	RDH14	chr2	18549723	18565653
RDH14_chr2_18549723_18565653	0/0	c0003	1011	5	5	0	0	0	0	copy fasta	RDH14	chr2	18549723	18565653
RDH14_chr2_18549723_18565653	0/0	c0004	1011	4	0	4	0	0	0	copy fasta	RDH14	chr2	18549723	18565653
RDH14_chr2_18549723_18565653	0/0	c0005	1011	2	2	0	0	0	0	copy fasta	RDH14	chr2	18549723	18565653
RDH14_chr2_18549723_18565653	0/0	c0006	1011	2	0	2	0	0	0	copy fasta	RDH14	chr2	18549723	18565653
RDH14_chr2_18549723_18565653	0/0	c0007	1011	1	0	0	1	0	0	copy fasta	RDH14	chr2	18549723	18565653
RDH14_chr2_18549723_18565653	0/0	c0008	1011	1	1	0	0	0	0	copy fasta	RDH14	chr2	18549723	18565653
RDH14_chr2_18549723_18565653	0/0	c0009	1011	1	0	0	0	0	1	copy fasta	RDH14	chr2	18549723	18565653
RDH14_chr2_18549723_18565653	0/0	c0010	1011	1	1	0	0	0	0	copy fasta	RDH14	chr2	18549723	18565653
RDH14_chr2_18549723_18565653	0/0	c0011	1011	1	0	0	1	0	0	copy fasta	RDH14	chr2	18549723	18565653
RDH16_chr12_56946431_56962608	1/1	c0001	954	360	82	72	150	12	42	copy fasta	RDH16	chr12	56946431	56962608
RDH16_chr12_56946431_56962608	0/0	c0002	954	8	8	0	0	0	0	copy fasta	RDH16	chr12	56946431	56962608
RDH16_chr12_56946431_56962608	0/0	c0003	954	4	3	1	0	0	0	copy fasta	RDH16	chr12	56946431	56962608
RDH16_chr12_56946431_56962608	0/0	c0004	954	1	1	0	0	0	0	copy fasta	RDH16	chr12	56946431	56962608
RDH16_chr12_56946431_56962608	0/0	c0005	954	1	0	0	1	0	0	copy fasta	RDH16	chr12	56946431	56962608
RDH16_chr12_56946431_56962608	0/0	c0006	954	1	0	1	0	0	0	copy fasta	RDH16	chr12	56946431	56962608
RDH16_chr12_56946431_56962608	0/0	c0007	954	1	0	0	1	0	0	copy fasta	RDH16	chr12	56946431	56962608
RDH5_chr12_55715393_55729705	1/1	c0001	957	300	53	52	161	7	25	copy fasta	RDH5	chr12	55715393	55729705
RDH5_chr12_55715393_55729705	0/0	c0002	957	51	35	6	5	0	5	copy fasta	RDH5	chr12	55715393	55729705
RDH5_chr12_55715393_55729705	0/0	c0003	957	40	1	9	10	7	13	copy fasta	RDH5	chr12	55715393	55729705
RDH5_chr12_55715393_55729705	0/0	c0004	957	6	0	3	3	0	0	copy fasta	RDH5	chr12	55715393	55729705