JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RDH5_chr12_55715393_55729705	0/0	c0005	957	5	4	1	0	0	0	copy fasta	RDH5	chr12	55715393	55729705
RDH5_chr12_55715393_55729705	0/0	c0006	957	2	2	0	0	0	0	copy fasta	RDH5	chr12	55715393	55729705
RDH5_chr12_55715393_55729705	0/0	c0007	957	1	0	0	1	0	0	copy fasta	RDH5	chr12	55715393	55729705
RDH5_chr12_55715393_55729705	0/0	c0008	957	1	1	0	0	0	0	copy fasta	RDH5	chr12	55715393	55729705
RDH5_chr12_55715393_55729705	0/0	c0009	957	1	0	0	0	0	1	copy fasta	RDH5	chr12	55715393	55729705
RDH5_chr12_55715393_55729705	0/0	c0010	957	1	0	1	0	0	0	copy fasta	RDH5	chr12	55715393	55729705
RDH8_chr19_10008483_10027279	1/1	c0001	936	184	29	43	85	10	15	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	c0002	936	116	6	13	83	4	10	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	c0003	936	63	13	14	18	2	16	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	c0004	936	37	10	0	23	0	4	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	c0005	936	24	3	10	8	1	2	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	c0006	936	18	18	0	0	0	0	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	c0007	936	6	5	1	0	0	0	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	c0008	936	3	3	0	0	0	0	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	c0009	936	2	1	0	0	1	0	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	c0010	936	2	1	1	0	0	0	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	c0011	936	1	1	0	0	0	0	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	c0012	936	1	0	0	0	0	1	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	c0013	936	1	0	1	0	0	0	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	c0014	936	1	1	0	0	0	0	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	c0015	936	1	1	0	0	0	0	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	c0016	936	1	1	0	0	0	0	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	c0017	936	1	0	1	0	0	0	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	c0018	936	1	1	0	0	0	0	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	c0019	936	1	0	0	1	0	0	copy fasta	RDH8	chr19	10008483	10027279
RDM1_chr17_35913080_35935773	0/1	c0001	855	207	47	35	101	8	15	copy fasta	RDM1	chr17	35913080	35935773
RDM1_chr17_35913080_35935773	0/0	c0002	855	100	27	17	42	2	12	copy fasta	RDM1	chr17	35913080	35935773
RDM1_chr17_35913080_35935773	0/0	c0003	855	31	1	2	27	0	1	copy fasta	RDM1	chr17	35913080	35935773
RDM1_chr17_35913080_35935773	0/0	c0004	855	11	9	2	0	0	0	copy fasta	RDM1	chr17	35913080	35935773
RDM1_chr17_35913080_35935773	0/0	c0005	855	4	4	0	0	0	0	copy fasta	RDM1	chr17	35913080	35935773
RDM1_chr17_35913080_35935773	0/0	c0006	855	1	1	0	0	0	0	copy fasta	RDM1	chr17	35913080	35935773
RDM1_chr17_35913080_35935773	0/0	c0007	855	1	1	0	0	0	0	copy fasta	RDM1	chr17	35913080	35935773
RDX_chr11_110224441_110301614	1/1	c0001	1752	371	95	62	162	16	34	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	c0002	1752	1	0	0	1	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	c0003	1752	1	0	0	1	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	c0004	1752	1	0	0	1	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	c0005	1752	1	1	0	0	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	c0006	1752	1	0	0	1	0	0	copy fasta	RDX	chr11	110224441	110301614
REC114_chr15_73438164_73565013	1/1	c0001	801	172	56	22	72	4	16	copy fasta	REC114	chr15	73438164	73565013
REC114_chr15_73438164_73565013	0/0	c0002	801	14	12	2	0	0	0	copy fasta	REC114	chr15	73438164	73565013
REC114_chr15_73438164_73565013	0/0	c0003	801	1	1	0	0	0	0	copy fasta	REC114	chr15	73438164	73565013
REC114_chr15_73438164_73565013	0/0	c0004	801	1	1	0	0	0	0	copy fasta	REC114	chr15	73438164	73565013
REC8_chr14_24167080_24185254	0/0	c0001	1644	279	72	43	124	9	31	copy fasta	REC8	chr14	24167080	24185254
REC8_chr14_24167080_24185254	0/0	c0002	1644	83	7	3	68	1	4	copy fasta	REC8	chr14	24167080	24185254
REC8_chr14_24167080_24185254	1/1	c0003	1644	61	6	23	10	6	14	copy fasta	REC8	chr14	24167080	24185254
REC8_chr14_24167080_24185254	0/0	c0004	1644	4	0	1	3	0	0	copy fasta	REC8	chr14	24167080	24185254
REC8_chr14_24167080_24185254	0/0	c0005	1644	2	2	0	0	0	0	copy fasta	REC8	chr14	24167080	24185254
REC8_chr14_24167080_24185254	0/0	c0006	1644	2	2	0	0	0	0	copy fasta	REC8	chr14	24167080	24185254
REC8_chr14_24167080_24185254	0/0	c0007	1644	2	0	1	0	0	1	copy fasta	REC8	chr14	24167080	24185254
REC8_chr14_24167080_24185254	0/0	c0008	1644	1	1	0	0	0	0	copy fasta	REC8	chr14	24167080	24185254