JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ASMTL_chrX_1398139_1457909	0/0	c0015	1866	2	2	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0016	1866	2	2	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0017	1866	2	2	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0018	1866	2	0	2	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0019	1867	1	0	0	1	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0020	1867	1	0	1	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0021	1867	1	0	1	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0022	1866	1	0	1	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0023	1866	1	0	0	1	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0024	1866	1	0	0	1	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0025	1866	1	1	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0026	1866	1	0	0	1	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0027	1866	1	1	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0028	1866	1	1	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0029	1866	1	1	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0030	1865	1	0	0	1	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0031	1866	1	0	1	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0032	1867	1	0	0	1	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0033	1866	1	1	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0034	1866	1	0	1	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0035	1866	1	0	0	1	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0036	1866	1	1	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0037	1866	1	1	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0038	1866	1	1	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0039	1865	1	0	0	0	0	1	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0040	1866	1	0	1	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0041	1866	1	1	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0042	1866	1	0	1	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0043	1865	1	1	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0044	1866	1	0	1	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0045	1866	1	0	0	0	1	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	c0046	1864	1	0	0	1	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMT_chrX_1610059_1648081	1/0	c0001	1122	103	35	25	31	3	8	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/1	c0002	1122	71	15	18	26	5	6	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	c0003	1122	31	4	3	21	0	3	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	c0004	1122	2	0	0	1	0	1	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	c0005	1122	2	2	0	0	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	c0006	1122	2	0	0	1	0	1	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	c0007	1123	1	0	0	1	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	c0008	1121	1	0	0	1	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	c0009	1122	1	1	0	0	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	c0010	1122	1	1	0	0	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	c0011	1122	1	1	0	0	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	c0012	1099	1	0	0	1	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	c0013	1123	1	0	0	1	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	c0014	1122	1	0	0	0	0	1	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	c0015	1121	1	0	0	1	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	c0016	1122	1	1	0	0	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	c0017	1123	1	0	0	1	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	c0018	1121	1	0	0	1	0	0	copy fasta	ASMT	chrX	1610059	1648081